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PLM3_30_b1_sep16_scaffold_1178

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_1178_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1..360)
DNA (360bp) protein (120aa)
Beta-lactamase domain protein Tax=Niabella soli DSM 19437 RepID=H1NMH3_9SPHI
Metallo-beta-lactamase {ECO:0000313|EMBL:KIC90694.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
metallo-beta-lactamase
PLM3_30_b1_sep16_scaffold_1178_2
unknown

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371..472
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_1178_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(459..884)
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01507.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1178_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1183..1692)
DNA (510bp) protein (170aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Diaminopimelate decarboxylase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ8_NIAKG
diaminopimelate decarboxylase
PLM3_30_b1_sep16_scaffold_1178_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1706..2251)
DNA (546bp) protein (182aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Diaminopimelate decarboxylase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ8_NIAKG
diaminopimelate decarboxylase
PLM3_30_b1_sep16_scaffold_1178_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2442..3179)
DNA (738bp) protein (246aa)
Chromosome segregation and condensation protein, ScpB Tax=Niabella soli DSM 19437 RepID=H1NRK8_9SPHI
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
chromosome segregation and condensation protein ScpB
PLM3_30_b1_sep16_scaffold_1178_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3188..3994)
DNA (807bp) protein (269aa)
F0F1 ATP synthase subunit gamma Tax=Segetibacter koreensis RepID=UPI0003690C5C
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
ATP synthase F1 subcomplex subunit gamma
PLM3_30_b1_sep16_scaffold_1178_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4267..5091
DNA (825bp) protein (275aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
5'-nucleotidase SurE Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR2_NIAKG
multifunctional protein surE
PLM3_30_b1_sep16_scaffold_1178_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5088..5387
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC95585.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_1178_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5523..6704
DNA (1182bp) protein (394aa)
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:AEW01514.1}; EC=2.4.1.182 {ECO:0000313|EMBL:AEW01514.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Lipid-A-disaccharide synthase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR4_NIAKG
lipid-A-disaccharide synthase
PLM3_30_b1_sep16_scaffold_1178_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6705..6875)
DNA (171bp) protein (57aa)
hypothetical protein Tax=Niabella aurantiaca RepID=UPI000381D7C3
Uncharacterized protein {ECO:0000313|EMBL:GAO41257.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_1178_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7081..7479)
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01518.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1178_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7634..8581
DNA (948bp) protein (316aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Malate dehydrogenase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP96_NIAKG
malate dehydrogenase
PLM3_30_b1_sep16_scaffold_1178_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8634..9206
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Myroides RepID=K1HX74_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAO42926.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
PLM3_30_b1_sep16_scaffold_1178_15
unknown

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comp(9166..9408)
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_1178_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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9446..11146
DNA (1701bp) protein (567aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035FD69B
Glucose/sorbosone dehydrogenase-like protein
Glucose/sorbosone dehydrogenase-like protein {ECO:0000313|EMBL:ACT95384.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
PLM3_30_b1_sep16_scaffold_1178_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11809..12147
DNA (339bp) protein (113aa)
YCII-related protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP94_NIAKG
hypothetical protein
YCII-related protein {ECO:0000313|EMBL:AEV96700.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1178_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12150..13415
DNA (1266bp) protein (422aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP93_NIAKG
putative ECF subfamily RNA polymerase sigma-24 subunit
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV96699.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1178_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13606..14433)
DNA (828bp) protein (276aa)
Glycosyl transferase family 9 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP91_NIAKG
glycosyl transferase family protein
Glycosyl transferase family 9 {ECO:0000313|EMBL:AEV96697.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1178_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(14583..15839)
DNA (1257bp) protein (419aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036FB4B2
major facilitator superfamily protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM3_30_b1_sep16_scaffold_1178_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(15857..16570)
DNA (714bp) protein (238aa)
SNARE associated golgi family protein Tax=Niabella soli DSM 19437 RepID=H1NKN9_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14624.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_1178_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16659..17918)
DNA (1260bp) protein (420aa)
Sodium:dicarboxylate symporter Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP88_NIAKG
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KIC89470.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
sodium:dicarboxylate symporter
PLM3_30_b1_sep16_scaffold_1178_23
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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18089..19516
DNA (1428bp) protein (476aa)
Amino acid transporter Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KY52_SOLCM
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AFD05790.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Displaying 23 items

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