ggKbase home page

PLM3_30_b1_sep16_scaffold_1189

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_1189_1
unknown

Not on your lists

2..997
DNA (996bp) protein (332aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_1189_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1063..1356)
DNA (294bp) protein (98aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGR6_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM3_30_b1_sep16_scaffold_1189_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2170..2688)
DNA (519bp) protein (173aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
lipoyl synthase Tax=Segetibacter koreensis RepID=UPI00036D7C0C
lipoyl synthase
PLM3_30_b1_sep16_scaffold_1189_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2762..3541)
DNA (780bp) protein (260aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGR8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98510.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1189_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3581..4003
DNA (423bp) protein (141aa)
OsmC family protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGR9_NIAKG
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:AEV98511.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1189_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3993..5258)
DNA (1266bp) protein (422aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036560A6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14806.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_1189_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5400..5963)
DNA (564bp) protein (188aa)
Maf-like protein Niako_1626 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T844_NIAKG
Maf-like protein OI18_14655 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Septum formation protein Maf
PLM3_30_b1_sep16_scaffold_1189_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5963..6910)
DNA (948bp) protein (316aa)
UbiA prenyltransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T843_NIAKG
UbiA prenyltransferase
UbiA prenyltransferase {ECO:0000313|EMBL:AEV97994.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1189_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6973..7494)
DNA (522bp) protein (174aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T842_NIAKG
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:AEV97993.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1189_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7672..7908)
DNA (237bp) protein (79aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000378B942
FeS assembly protein IscX {ECO:0000313|EMBL:KIC93838.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
FeS assembly protein IscX
PLM3_30_b1_sep16_scaffold_1189_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7969..8307)
DNA (339bp) protein (113aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037A3C0E
Putative 2Fe-2S ferredoxin {ECO:0000313|EMBL:GAO45331.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ferredoxin
PLM3_30_b1_sep16_scaffold_1189_12
unknown

Not on your lists

comp(8749..8883)
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_1189_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8880..9641)
DNA (762bp) protein (254aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQY3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97882.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1189_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9702..10541
DNA (840bp) protein (280aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037F7328
Uncharacterized protein {ECO:0000313|EMBL:KIC93841.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_1189_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10614..11270)
DNA (657bp) protein (219aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Protein-L-isoaspartate O-methyltransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQY2_NIAKG
protein-L-isoaspartate O-methyltransferase
PLM3_30_b1_sep16_scaffold_1189_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11361..11969
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH03_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00614.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1189_17

Not on your lists

11982..12785
DNA (804bp) protein (268aa)
ubiE4; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-)
hypothetical protein Tax=Flavobacterium rivuli RepID=UPI00037C00CB
Type 11 methyltransferase {ECO:0000313|EMBL:AHN97836.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac111.;"
PLM3_30_b1_sep16_scaffold_1189_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12870..13727
DNA (858bp) protein (286aa)
Phytanoyl-CoA dioxygenase Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2S5_DYAFD
Phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:ACT95638.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
PLM3_30_b1_sep16_scaffold_1189_19
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13986..14942)
DNA (957bp) protein (319aa)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THW5_NIAKG
Phosphoglucomutase {ECO:0000313|EMBL:KIC91819.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
Displaying 19 items

View Taxonomy