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PLM3_30_b1_sep16_scaffold_5808

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_5808_trna_1
unknown

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comp(11..85)
DNA (75bp)
transferRNA Val
PLM3_30_b1_sep16_scaffold_5808_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(204..1442)
DNA (1239bp) protein (413aa)
Drug resistance transporter, Bcr/CflA subfamily Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDH2_NIAKG
Bcr/CflA subfamily drug resistance transporter
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:AEW00422.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_5808_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1503..3110)
DNA (1608bp) protein (536aa)
Sodium/proton antiporter, CPA1 family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7C4_NIAKG
sodium/proton antiporter
Sodium/proton antiporter, CPA1 family {ECO:0000313|EMBL:AEW01160.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_5808_3
Parachlamydia acanthamoebae, Parachlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(3169..3744)
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Parachlamydia acanthamoebae RepID=F8L0I7_PARAV
Uncharacterized protein {ECO:0000313|EMBL:KIA77534.1}; species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Parachlamydia.;" source="Parachlamydia acanthamoebae.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_5808_4
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3781..4776)
DNA (996bp) protein (332aa)
Aldo-keto reductase Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2STW1_9DELT
Aldo-keto reductase {ECO:0000313|EMBL:ERK92130.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
aldo/keto reductase
PLM3_30_b1_sep16_scaffold_5808_5
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4872..5813)
DNA (942bp) protein (314aa)
Transcriptional regulator, AraC family Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QWE6_CHLT3
Transcriptional regulator {ECO:0000313|EMBL:KIA85715.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
AraC family transcriptional regulator
PLM3_30_b1_sep16_scaffold_5808_6
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(5800..6567)
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BRU9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM83310.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_5808_7
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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6723..7976
DNA (1254bp) protein (418aa)
Putative uncharacterized protein bin=GWF2_Bacteroidetes_41_9 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
glycoside hydrolase
Tax=GWA2_Bacteroidetes_40_15_curated
PLM3_30_b1_sep16_scaffold_5808_8
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8836..9849
DNA (1014bp) protein (338aa)
hypothetical protein Tax=Calothrix sp. PCC 7103 RepID=UPI0002EE38DB
Uncharacterized protein {ECO:0000313|EMBL:GAO45716.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_5808_9
unknown

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10156..10965
DNA (810bp) protein (270aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_5808_10
Leptospira broomii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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11048..11413
DNA (366bp) protein (122aa)
Methyladenine glycosylase Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0FF20_9LEPT
Methyladenine glycosylase {ECO:0000313|EMBL:EQA46197.1}; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira broomii serovar Hurstbridge str. 5399.;"
DNA-3-methyladenine glycosylase
PLM3_30_b1_sep16_scaffold_5808_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11655..13250)
DNA (1596bp) protein (532aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035C6F80
Two-component histidine kinase KdpD {ECO:0000313|EMBL:GAO41018.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
multi-sensor signal transduction histidine kinase
PLM3_30_b1_sep16_scaffold_5808_12
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(13250..14389)
DNA (1140bp) protein (380aa)
FrrC, osmosensitive K+ channel histidine kinase Tax=Segetibacter koreensis RepID=UPI000378CEB2
Two-component histidine kinase KdpD {ECO:0000313|EMBL:GAO41017.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
osmosensitive K+ channel signal transduction histidine kinase, sensor subunit KdpD
PLM3_30_b1_sep16_scaffold_5808_13
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(14386..14994)
DNA (609bp) protein (203aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035EED82
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD08778.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Displaying 14 items

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