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PLM3_30_b1_sep16_scaffold_2140

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2140_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(203..1231)
DNA (1029bp) protein (343aa)
Putative signal transduction histidine kinase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA81_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC94284.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
putative signal transduction histidine kinase
PLM3_30_b1_sep16_scaffold_2140_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1654..2373
DNA (720bp) protein (240aa)
protocatechuate 3,4-dioxygenase, beta subunit (EC:1.13.11.3)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI00035C1240
Intradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:KIC94452.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
PLM3_30_b1_sep16_scaffold_2140_3
unknown

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2383..3357
DNA (975bp) protein (325aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2140_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3391..4080)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGE2_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97365.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2140_5
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4151..4633)
DNA (483bp) protein (161aa)
Uncharacterized protein Tax=Clostridium thermocellum JW20 RepID=D1NRD3_CLOTM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV67844.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
PLM3_30_b1_sep16_scaffold_2140_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4713..5867)
DNA (1155bp) protein (385aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEV97364.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEV97364.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Butyryl-CoA dehydrogenase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGE1_NIAKG
butyryl-CoA dehydrogenase
PLM3_30_b1_sep16_scaffold_2140_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6097..7044
DNA (948bp) protein (316aa)
arginase Tax=Segetibacter koreensis RepID=UPI000373B1D4
arginase/agmatinase/formiminoglutamase
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:ACU63697.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_2140_8
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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7103..7702
DNA (600bp) protein (200aa)
hypothetical protein Tax=Niabella aurantiaca RepID=UPI00035C1FCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI47412.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
PLM3_30_b1_sep16_scaffold_2140_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7963..8859)
DNA (897bp) protein (299aa)
dTDP-4-dehydrorhamnose reductase Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG83_CHIPD
dTDP-4-dehydrorhamnose reductase
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ACU59815.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_2140_10
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(9110..9937)
DNA (828bp) protein (276aa)
prolyl endopeptidase Tax=Spirosoma luteum RepID=UPI00036C9CD5
prolyl endopeptidase
Prolyl endopeptidase {ECO:0000313|EMBL:AKD57940.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
PLM3_30_b1_sep16_scaffold_2140_11
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(9943..11118)
DNA (1176bp) protein (392aa)
Prolyl oligopeptidase {ECO:0000313|EMBL:AEI47906.1}; EC=3.4.21.26 {ECO:0000313|EMBL:AEI47906.1};; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Prolyl oligopeptidase Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ECN1_RUNSL
prolyl oligopeptidase
PLM3_30_b1_sep16_scaffold_2140_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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11331..12311
DNA (981bp) protein (327aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
6-phosphofructokinase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGD7_NIAKG
6-phosphofructokinase
PLM3_30_b1_sep16_scaffold_2140_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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12944..14434
DNA (1491bp) protein (497aa)
Pyruvate kinase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGD6_NIAKG
pyruvate kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM3_30_b1_sep16_scaffold_2140_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14542..15297)
DNA (756bp) protein (252aa)
hypothetical protein Tax=Pedobacter arcticus RepID=UPI0002DAF6A8
copper homeostasis protein CutC
Copper homeostasis protein CutC {ECO:0000313|EMBL:AHF14233.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_2140_15
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(15328..15798)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Pseudomonas putida HB3267 RepID=L0FFA2_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ95810.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
PLM3_30_b1_sep16_scaffold_2140_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(15862..16890)
DNA (1029bp) protein (343aa)
glycosylasparaginase Tax=Niabella aurantiaca RepID=UPI00036E00E5
glycosylasparaginase
Glycosylasparaginase {ECO:0000313|EMBL:AHF14232.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_2140_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

17006..17563
DNA (558bp) protein (186aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037DA0BB
NADPH-dependent FMN reductase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM3_30_b1_sep16_scaffold_2140_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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17740..19581
DNA (1842bp) protein (614aa)
Hydrolase CocE/NonD family protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9P8_NIAKG
hydrolase
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:AEW00241.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2140_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19837..20214
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEQ5_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU57877.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_2140_20
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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20440..21789
DNA (1350bp) protein (450aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000378469D
Strain DSM 12611 Contig02, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54542.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
beta-N-acetylhexosaminidase
Displaying 20 items

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