ggKbase home page

PLM3_30_b1_sep16_scaffold_2398

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2398_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..1177
DNA (1176bp) protein (392aa)
TonB-dependent receptor plug Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK04_NIAKG
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEW02942.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2398_2
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1375..2460
DNA (1086bp) protein (362aa)
Signal transduction histidine kinase, LytS Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT72_CHIPD
Signal transduction histidine kinase LytS {ECO:0000313|EMBL:AHM60716.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
signal transduction histidine kinase LytS
PLM3_30_b1_sep16_scaffold_2398_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2457..3164
DNA (708bp) protein (236aa)
Two component transcriptional regulator, LytTR family Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT73_CHIPD
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACU60863.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_2398_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3395..6748
DNA (3354bp) protein (1118aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC95352.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Periplasmic protease bin=GWF2_Bacteroidetes_49_14 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
periplasmic protease
PLM3_30_b1_sep16_scaffold_2398_5
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6910..7263)
DNA (354bp) protein (118aa)
30S ribosomal protein S23 Tax=Cytophagales str. B6 RepID=UPI0003B661E1
S23 ribosomal protein
S23 ribosomal protein {ECO:0000313|EMBL:ADY52481.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
PLM3_30_b1_sep16_scaffold_2398_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7592..9994
DNA (2403bp) protein (801aa)
ABC-type transport system, involved in lipoprotein release, permease component Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KSV2_SOLCM
lipoprotein release ABC transporter permease
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:AFD05412.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
PLM3_30_b1_sep16_scaffold_2398_7
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10653..11234
DNA (582bp) protein (194aa)
Glycosyl hydrolase family 88 Tax=Niabella soli DSM 19437 RepID=H1NTY0_9SPHI
Glycoside hydrolase {ECO:0000313|EMBL:KIA96962.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
glycoside hydrolase
PLM3_30_b1_sep16_scaffold_2398_8
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11367..12701)
DNA (1335bp) protein (445aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037B1C05
Uncharacterized protein {ECO:0000313|EMBL:KFF22186.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
uncharacterized protein
PLM3_30_b1_sep16_scaffold_2398_9
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12970..14235)
DNA (1266bp) protein (422aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036FB4B2
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEE53537.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
PLM3_30_b1_sep16_scaffold_2398_10
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14662..15015)
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Fibrisoma limi BUZ 3 RepID=I2GU16_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH57617.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
plasmid maintenance system antidote protein
PLM3_30_b1_sep16_scaffold_2398_11
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

comp(15221..15877)
DNA (657bp) protein (219aa)
hypothetical protein MsalJ2_11639 bin=GWE2_Bacteroidetes_42_42 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
Tax=GWF2_Bacteroidetes_43_63_curated
PLM3_30_b1_sep16_scaffold_2398_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16091..17248)
DNA (1158bp) protein (386aa)
hypothetical protein Tax=Eudoraea adriatica RepID=UPI000380D85F
Uncharacterized protein {ECO:0000313|EMBL:KIC93287.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
lipid A 3-O-deacylase, PagL superfamily
PLM3_30_b1_sep16_scaffold_2398_13
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17512..17730
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FHJ5_FLAJ1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ05326.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
PLM3_30_b1_sep16_scaffold_2398_14
unknown

Not on your lists

17862..18092
DNA (231bp) protein (77aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2398_15
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18667..18951
DNA (285bp) protein (95aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FTQ3_9FLAO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
PLM3_30_b1_sep16_scaffold_2398_16
unknown

Not on your lists

19146..20195
DNA (1050bp) protein (350aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2398_17
unknown

Not on your lists

comp(20291..21208)
DNA (918bp) protein (306aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2398_18
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21605..22396
DNA (792bp) protein (264aa)
Peptidase S51 dipeptidase E Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZE7_HALH1
peptidase S51 dipeptidase E
Peptidase S51 dipeptidase E {ECO:0000313|EMBL:AEE48442.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
PLM3_30_b1_sep16_scaffold_2398_19
unknown

Not on your lists

comp(22795..22896)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2398_20
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23668..23952
DNA (285bp) protein (95aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FTQ3_9FLAO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
PLM3_30_b1_sep16_scaffold_2398_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24723..25109
DNA (387bp) protein (129aa)
imidazole glycerol phosphate synthase Tax=Pedobacter agri RepID=UPI000299E860
leucyl-tRNA synthetase
Leucyl-tRNA synthetase {ECO:0000313|EMBL:ADQ80832.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
PLM3_30_b1_sep16_scaffold_2398_22
unknown

Not on your lists

comp(25237..25626)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2398_23
unknown

Not on your lists

26184..27248
DNA (1065bp) protein (355aa)

This feature has no annotations

Displaying 23 items

View Taxonomy