ggKbase home page

PLM3_30_b1_sep16_scaffold_3868

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_3868_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..716
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMM3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02011.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

683..1498
DNA (816bp) protein (272aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Putative signal transduction histidine kinase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMM2_NIAKG
putative signal transduction histidine kinase
PLM3_30_b1_sep16_scaffold_3868_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1500..2156
DNA (657bp) protein (219aa)
Two component transcriptional regulator, LuxR family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMM1_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEW02009.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2406..5018)
DNA (2613bp) protein (871aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Carbamoyl-phosphate synthase, large subunit Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMM0_NIAKG
carbamoyl-phosphate synthase large subunit
PLM3_30_b1_sep16_scaffold_3868_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5207..5422)
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TML9_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02007.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5679..7280
DNA (1602bp) protein (534aa)
Peptidase M23 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TML8_NIAKG
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AEW02006.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7324..7815
DNA (492bp) protein (164aa)
Peroxiredoxin {ECO:0000313|EMBL:AEW02005.1}; EC=1.11.1.15 {ECO:0000313|EMBL:AEW02005.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Peroxiredoxin Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TML7_NIAKG
peroxiredoxin
PLM3_30_b1_sep16_scaffold_3868_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7894..8349
DNA (456bp) protein (152aa)
Response regulator receiver protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNX6_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC96329.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
response regulator receiver protein
PLM3_30_b1_sep16_scaffold_3868_9
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8487..9005
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Fibrella aestuarina BUZ 2 RepID=I0K722_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD56605.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
PLM3_30_b1_sep16_scaffold_3868_10
unknown

Not on your lists

9074..9580
DNA (507bp) protein (169aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_3868_11
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9768..10577
DNA (810bp) protein (270aa)
Uncharacterized protein Tax=Fibrisoma limi BUZ 3 RepID=I2GFK4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52679.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_3868_12
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10729..11493
DNA (765bp) protein (255aa)
Uncharacterized protein Tax=Fibrisoma limi BUZ 3 RepID=I2GFK4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52679.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_3868_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11609..13285
DNA (1677bp) protein (559aa)
Histidine kinase Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFB2_CHIPD
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ACU61617.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_3868_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13260..14504
DNA (1245bp) protein (415aa)
Histidine kinase Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFB2_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC96069.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
histidine kinase
PLM3_30_b1_sep16_scaffold_3868_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14978..15214
DNA (237bp) protein (79aa)
Transcriptional regulatory protein degU Tax=Fibrisoma limi BUZ 3 RepID=I2GK18_9BACT
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIC96070.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
LuxR family transcriptional regulator
PLM3_30_b1_sep16_scaffold_3868_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15442..17163
DNA (1722bp) protein (574aa)
Uncharacterized protein Tax=Flavobacterium sp. F52 RepID=J1KX72_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIC96071.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_3868_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17316..17672
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Niabella soli DSM 19437 RepID=H1NR92_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17778.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_3868_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17712..18131
DNA (420bp) protein (140aa)
Nucleic acid binding OB-fold tRNA/helicase-type Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TML4_NIAKG
OB-fold tRNA/helicase-type nucleic acid binding-protein
Nucleic acid binding OB-fold tRNA/helicase-type {ECO:0000313|EMBL:AEW02002.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18154..18702
DNA (549bp) protein (183aa)
YceI family protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TML3_NIAKG
hypothetical protein
YceI family protein {ECO:0000313|EMBL:AEW02001.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18751..19647
DNA (897bp) protein (299aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI13_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99616.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3868_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19691..20020
DNA (330bp) protein (110aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037DA172
Uncharacterized protein {ECO:0000313|EMBL:KIC89692.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_3868_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20195..20953)
DNA (759bp) protein (253aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000366A2CF
Biotin--acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:KIC89691.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
biotin--acetyl-CoA-carboxylase ligase
PLM3_30_b1_sep16_scaffold_3868_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21145..21531
DNA (387bp) protein (129aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000367A469
iojap family protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 23 items

View Taxonomy