ggKbase home page

PLM3_30_b2_sep16_scaffold_1581

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_1581_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

307..1455
DNA (1149bp) protein (383aa)
RDD domain containing protein Tax=Pedosphaera parvula Ellin514 RepID=B9XGE6_9BACT
RDD domain containing protein {ECO:0000313|EMBL:EEF60997.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1581_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

1477..1932
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FW87_ECHVK
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3_30_b2_sep16_scaffold_1581_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1958..2530
DNA (573bp) protein (191aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Uncharacterized protein {ECO:0000313|EMBL:EEF60996.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1581_4
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

2530..3099
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XGE4_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
PLM3_30_b2_sep16_scaffold_1581_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3195..3710
DNA (516bp) protein (172aa)
FHA domain containing protein Tax=Pedosphaera parvula Ellin514 RepID=B9XKW3_9BACT
FHA domain containing protein {ECO:0000313|EMBL:EEF59457.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cyaA1; putative adenylate cyclase
PLM3_30_b2_sep16_scaffold_1581_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3853..4407
DNA (555bp) protein (185aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XGS8_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF60849.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM3_30_b2_sep16_scaffold_1581_7
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

4428..5261
DNA (834bp) protein (278aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_16_Aminicenantes_63_16_curated
PLM3_30_b2_sep16_scaffold_1581_8
unknown

Not on your lists

5355..5900
DNA (546bp) protein (182aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1581_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

5897..6658
DNA (762bp) protein (254aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4D6H9_9BACT
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:EDY18088.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
amidohydrolase
PLM3_30_b2_sep16_scaffold_1581_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6708..9188
DNA (2481bp) protein (827aa)
Uncharacterized protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EMB6_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI50554.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
PLM3_30_b2_sep16_scaffold_1581_11
unknown

Not on your lists

9380..9682
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1581_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

9719..10681
DNA (963bp) protein (321aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CUQ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY22291.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1581_13
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10709..11056)
DNA (348bp) protein (116aa)
hypothetical protein Tax=Desulfospira joergensenii RepID=UPI0003B598AA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ02754.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
PLM3_30_b2_sep16_scaffold_1581_14
unknown

Not on your lists

comp(11217..11984)
DNA (768bp) protein (256aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1581_15
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

12056..13879
DNA (1824bp) protein (608aa)
Peptidase M1, membrane alanine aminopeptidase Tax=Blastopirellula marina DSM 3645 RepID=A4A0L0_9PLAN
peptidase M1 membrane alanine aminopeptidase
Tax=RBG_13_Planctomycetes_50_24_curated
PLM3_30_b2_sep16_scaffold_1581_16
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(14009..14713)
DNA (705bp) protein (235aa)
id=3544318 bin=GWC2_Planctomycetes_45_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM3_30_b2_sep16_scaffold_1581_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15207..16172
DNA (966bp) protein (322aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XNT2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58505.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying 17 items

View Taxonomy