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PLM3_30_b2_sep16_scaffold_1783

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_1783_1
unknown

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3..140
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1783_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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137..1159
DNA (1023bp) protein (341aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XPW6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58147.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_30_b2_sep16_scaffold_1783_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1291..2076
DNA (786bp) protein (262aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Prolipoprotein diacylglyceryl transferase Tax=Pedosphaera parvula Ellin514 RepID=B9XPW5_9BACT
prolipoprotein diacylglyceryl transferase
PLM3_30_b2_sep16_scaffold_1783_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2110..3024
DNA (915bp) protein (305aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tRNA dimethylallyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XPW4_9BACT
tRNA delta(2)-isopentenylpyrophosphate transferase
PLM3_30_b2_sep16_scaffold_1783_5
unknown

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comp(3043..3549)
DNA (507bp) protein (169aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1783_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3628..4860
DNA (1233bp) protein (411aa)
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:EEF57153.1}; EC=5.4.3.2 {ECO:0000313|EMBL:EEF57153.1};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2)
Lysine 2,3-aminomutase YodO family protein Tax=Pedosphaera parvula Ellin514 RepID=B9XSN4_9BACT
PLM3_30_b2_sep16_scaffold_1783_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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4913..5524
DNA (612bp) protein (204aa)
Putative uncharacterized protein Tax=Beggiatoa sp. PS RepID=A7BQZ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETX04060.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1783_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5531..6202
DNA (672bp) protein (224aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA-(apurinic or apyrimidinic site) lyase/endonuclease III (EC:3.2.2.- 4.2.99.18)
Endonuclease III Tax=Pedosphaera parvula Ellin514 RepID=B9XSN1_9BACT
PLM3_30_b2_sep16_scaffold_1783_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6509..7321)
DNA (813bp) protein (271aa)
Amidohydrolase 2 Tax=Pedosphaera parvula Ellin514 RepID=B9XBC5_9BACT
Amidohydrolase 2 {ECO:0000313|EMBL:EEF62810.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
amidohydrolase 2
PLM3_30_b2_sep16_scaffold_1783_10
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7552..9558
DNA (2007bp) protein (669aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XJI8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EWT01096.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
BNR/Asp-box repeat-containing protein
PLM3_30_b2_sep16_scaffold_1783_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9857..12280)
DNA (2424bp) protein (808aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XL89_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59440.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1783_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12492..13817
DNA (1326bp) protein (442aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit Tax=Pedosphaera parvula Ellin514 RepID=B9XPL1_9BACT
PLM3_30_b2_sep16_scaffold_1783_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

13880..16189
DNA (2310bp) protein (770aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit Tax=Chthoniobacter flavus Ellin428 RepID=B4CWT5_9BACT
PLM3_30_b2_sep16_scaffold_1783_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16449..17471
DNA (1023bp) protein (341aa)
Ceramide glucosyltransferase, putative Tax=Pedosphaera parvula Ellin514 RepID=B9XKE8_9BACT
Ceramide glucosyltransferase, putative {ECO:0000313|EMBL:EEF59618.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hopanoid biosynthesis associated glycosyl transferase HpnI
PLM3_30_b2_sep16_scaffold_1783_15
unknown

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18118..18327
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1783_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18842..20347
DNA (1506bp) protein (502aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XH95_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEF60730.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_30_b2_sep16_scaffold_1783_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20556..20750
DNA (195bp) protein (65aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_30_b2_sep16_scaffold_1783_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20756..21658
DNA (903bp) protein (301aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_30_b2_sep16_scaffold_1783_19
unknown

Not on your lists

21660..22211
DNA (552bp) protein (184aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1783_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(22404..23120)
DNA (717bp) protein (239aa)
DNA repair protein RecN Tax=Pedosphaera parvula Ellin514 RepID=B9XP66_9BACT
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA recombination protein RecN
PLM3_30_b2_sep16_scaffold_1783_21
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

23131..24147
DNA (1017bp) protein (339aa)
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3_30_b2_sep16_scaffold_1783_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24221..24955
DNA (735bp) protein (245aa)
Beta-lactamase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XP67_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:EEF58318.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phnP; Metal-dependent hydrolase of the beta-lactamase superfamily
PLM3_30_b2_sep16_scaffold_1783_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25117..26205
DNA (1089bp) protein (363aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XP68_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58319.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying 23 items

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