ggKbase home page

PLM3_30_b2_sep16_scaffold_12868

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_12868_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2..832
DNA (831bp) protein (277aa)
Alanine--glyoxylate transaminase {ECO:0000313|EMBL:EEF59102.1}; EC=2.6.1.44 {ECO:0000313|EMBL:EEF59102.1};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Alanine--glyoxylate transaminase Tax=Pedosphaera parvula Ellin514 RepID=B9XLX4_9BACT
serine-pyruvate aminotransferase
PLM3_30_b2_sep16_scaffold_12868_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

836..2011
DNA (1176bp) protein (392aa)
Aminotransferase class I and II Tax=Pedosphaera parvula Ellin514 RepID=B9XP88_9BACT
Aminotransferase class I and II {ECO:0000313|EMBL:EEF58339.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aspartate/tyrosine/aromatic aminotransferase
PLM3_30_b2_sep16_scaffold_12868_3
unknown

Not on your lists

comp(2216..2731)
DNA (516bp) protein (172aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_12868_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2775..4190)
DNA (1416bp) protein (472aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Pedosphaera parvula Ellin514 RepID=B9XNQ1_9BACT
PLM3_30_b2_sep16_scaffold_12868_5
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(4292..4654)
DNA (363bp) protein (121aa)
hypothetical protein Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034CBF7E
hypothetical protein
Tax=CG_Anaero_04
PLM3_30_b2_sep16_scaffold_12868_6

Not on your lists

comp(4641..4949)
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK63831.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DNA polymerase beta domain protein region bin=GWF2_Ignavibacteria_35_20 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
DNA polymerase subunit beta
PLM3_30_b2_sep16_scaffold_12868_7
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

comp(5173..5724)
DNA (552bp) protein (184aa)
Cadherin family protein Tax=Anabaena sp. 90 RepID=K7W1Z3_9NOST
cadherin family protein
Tax=RBG_16_Armatimonadetes_58_9_curated
PLM3_30_b2_sep16_scaffold_12868_8
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5851..6846)
DNA (996bp) protein (332aa)
Probable large, multifunctional secreted protein Tax=Planctomyces maris DSM 8797 RepID=A6CBM2_9PLAN
Probable large, multifunctional secreted protein {ECO:0000313|EMBL:EDL57949.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
heme-binding domain-containing protein
Displaying 8 items

View Taxonomy