ggKbase home page

PLM3_30_b2_sep16_scaffold_681

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_681_1
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(266..2146)
DNA (1881bp) protein (627aa)
hypothetical protein Tax=Balneola vulgaris RepID=UPI00037AA582
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII50398.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
PLM3_30_b2_sep16_scaffold_681_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(2332..2652)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CWD5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21727.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM3_30_b2_sep16_scaffold_681_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3187..4275)
DNA (1089bp) protein (363aa)
RNA polymerase sigma factor Tax=Pedosphaera parvula Ellin514 RepID=B9XGK9_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RpoD family RNA polymerase sigma factor
PLM3_30_b2_sep16_scaffold_681_4
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4400..5149
DNA (750bp) protein (250aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Chthoniobacter flavus Ellin428 RepID=B4D7E9_9BACT
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM3_30_b2_sep16_scaffold_681_5
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

5191..6366
DNA (1176bp) protein (392aa)
ASPIC/UnbV domain-containing protein Tax=Rhodopirellula baltica WH47 RepID=F2AVC1_RHOBT
ASPIC/UnbV domain-containing protein {ECO:0000313|EMBL:EGF26467.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica WH47.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_681_6
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6363..7049
DNA (687bp) protein (229aa)
ASPIC/UnbV domain-containing protein Tax=Rhodopirellula maiorica SM1 RepID=M5RPP2_9PLAN
ASPIC/UnbV domain-containing protein {ECO:0000313|EMBL:EMI21191.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_681_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7624..10494)
DNA (2871bp) protein (957aa)
Immunoglobulin I-set domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XEH0_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF61684.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_681_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10595..11401)
DNA (807bp) protein (269aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037E85C7
Uncharacterized protein {ECO:0000313|EMBL:EEF63125.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
PLM3_30_b2_sep16_scaffold_681_9
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11611..11970)
DNA (360bp) protein (120aa)
Secreted protein containing DUF1501 Tax=Rhodopirellula baltica RepID=L7CHQ9_RHOBT
hypothetical protein
Protein containing DUF1501 {ECO:0000313|EMBL:EGF24739.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica WH47.;"
PLM3_30_b2_sep16_scaffold_681_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12101..13996
DNA (1896bp) protein (632aa)
Type IV pilus assembly protein PilM Tax=Pedosphaera parvula Ellin514 RepID=B9XEZ8_9BACT
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EEF61496.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell division protein FtsA
PLM3_30_b2_sep16_scaffold_681_11
unknown

Not on your lists

14000..14974
DNA (975bp) protein (325aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_681_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14980..15813
DNA (834bp) protein (278aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XF00_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61498.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_30_b2_sep16_scaffold_681_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15839..17299
DNA (1461bp) protein (487aa)
Type II and III secretion system protein Tax=Pedosphaera parvula Ellin514 RepID=B9XF01_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:EEF61499.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Di-heme cytochrome C peroxidase
Displaying 13 items

View Taxonomy