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PLM3-1_50_b1_sep16_scaffold_145

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_145_1
GWA2_Bacteroidetes_31_9b_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(2..430)
DNA (429bp) protein (143aa)
Two-component system, cell cycle response regulator Tax=Pseudoalteromonas sp. BSi20429 RepID=G7EZ29_9GAMM
hypothetical protein
Tax=GWA2_Bacteroidetes_31_9b_curated
PLM3-1_50_b1_sep16_scaffold_145_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(539..949)
DNA (411bp) protein (137aa)
Integrase family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIR7_NITGG
integrase family protein
Integrase family protein {ECO:0000313|EMBL:AFU59840.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_trna_1
unknown

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comp(1021..1095)
DNA (75bp)
transferRNA Val
PLM3-1_50_b1_sep16_scaffold_145_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1261..1782
DNA (522bp) protein (174aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60124.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1812..2168
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJC8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85328.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_145_5
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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2304..2870
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0R5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EIJ65308.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_145_6
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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2890..3570
DNA (681bp) protein (227aa)
ExsB family protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BBV7_9ARCH
ExsB family protein {ECO:0000313|EMBL:AFS83753.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
ExsB family protein
PLM3-1_50_b1_sep16_scaffold_145_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3557..4297
DNA (741bp) protein (247aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Archaeosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Radical SAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I746_NITGG
radical SAM domain-containing protein
PLM3-1_50_b1_sep16_scaffold_145_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4312..4893
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
GTP cyclohydrolase 1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC10_NITGG
PLM3-1_50_b1_sep16_scaffold_145_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4946..5218
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFT9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15580.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_145_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5299..6291)
DNA (993bp) protein (331aa)
Replication factor C small subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM96_NITGG
rfcS; replication factor C small subunit
Replication factor C small subunit {ECO:0000313|EMBL:AFU57669.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6377..6913
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II80_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15578.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_145_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6914..8992
DNA (2079bp) protein (693aa)
Minichromosome maintenance complex protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFU3_NITGG
mcm; minichromosome maintenance complex protein
Minichromosome maintenance complex protein {ECO:0000313|EMBL:AFU57673.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_13
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9282..11444
DNA (2163bp) protein (721aa)
superfamily II helicase (EC:3.6.4.-)
ATP-dependent DNA helicase Hel308 {ECO:0000256|HAMAP-Rule:MF_00442}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00442};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative ski2-type helicase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM99_NITGG
PLM3-1_50_b1_sep16_scaffold_145_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11526..12503
DNA (978bp) protein (326aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase (EC:2.7.8.15)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase {ECO:0000313|EMBL:AIF84774.1}; EC=2.7.8.15 {ECO:0000313|EMBL:AIF84774.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative glycosyl transferase, family 4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDG1_NITGG
PLM3-1_50_b1_sep16_scaffold_145_15
unknown

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12500..12739
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_145_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12851..13885)
DNA (1035bp) protein (345aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL82_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59362.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14335..15000
DNA (666bp) protein (222aa)
Transcription elongation factor Spt5 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH71_NITGG
nusG; transcription antitermination protein NusG
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_18
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15051..15533
DNA (483bp) protein (161aa)
50S ribosomal protein L11 Tax=Candidatus Nitrososphaera gargensis RepID=K0INP7_NITGG
rpl11p; 50S ribosomal protein L11p
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_145_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15619..17259
DNA (1641bp) protein (547aa)
Archaeal thermosome Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEG7_NITGG
thsA4; archaeal thermosome
Archaeal thermosome {ECO:0000313|EMBL:AFU59736.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17529..18008)
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL97_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59382.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_21
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18120..18770
DNA (651bp) protein (217aa)
DNA-directed RNA polymerase, alpha subunit/40 kD subunit (EC:2.7.7.6)
DNA-directed RNA polymerase, alpha subunit/40 kD subunit {ECO:0000313|EMBL:AIF83406.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AIF83406.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
DNA-directed RNA polymerase subunit D Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHB5_NITGG
PLM3-1_50_b1_sep16_scaffold_145_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18813..19160
DNA (348bp) protein (116aa)
50S ribosomal protein L18e Tax=Candidatus Nitrososphaera gargensis RepID=K0ID54_NITGG
ribosomal protein L18E
Ribosomal protein L18E {ECO:0000313|EMBL:AIF83405.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_145_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19153..19638
DNA (486bp) protein (162aa)
R-protein L13p (Fragment) Tax=Candidatus Nitrososphaera gargensis RepID=E0A1H4_9ARCH
R-protein L13p {ECO:0000313|EMBL:ADK26030.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
rpl13p; 50S ribosomal protein L13p
PLM3-1_50_b1_sep16_scaffold_145_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19628..20074
DNA (447bp) protein (149aa)
30S ribosomal protein S9p Tax=Candidatus Nitrososphaera gargensis RepID=K0IJH2_NITGG
rps9p; 30S ribosomal protein S9p
30S ribosomal protein S9p {ECO:0000313|EMBL:AFU59318.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20491..21807
DNA (1317bp) protein (439aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_00051};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Serine hydroxymethyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INY7_NITGG
PLM3-1_50_b1_sep16_scaffold_145_26
unknown

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22159..22515
DNA (357bp) protein (119aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_145_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22684..23109
DNA (426bp) protein (142aa)
Putative UspA domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAX5_NITGG
UspA domain-containing protein
Putative UspA domain protein {ECO:0000313|EMBL:AFU58486.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_145_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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23209..23937
DNA (729bp) protein (243aa)
cob(II)yrinic acid a,c-diamide reductase (EC:1.16.8.1)
Cob(II)yrinic acid a,c-diamide reductase {ECO:0000313|EMBL:AIF82910.1}; EC=1.16.8.1 {ECO:0000313|EMBL:AIF82910.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative cob(II)yrinic acid a,c-diamide reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHI6_NITGG
PLM3-1_50_b1_sep16_scaffold_145_29
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(24029..25249)
DNA (1221bp) protein (407aa)
ytsJ; NAD(P)-dependent malic enzyme (EC:1.1.1.38)
NAD(P)-dependent malic enzyme {ECO:0000313|EMBL:AIC14366.1}; EC=1.1.1.38 {ECO:0000313|EMBL:AIC14366.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI00036572D4
Displaying items 1-30 of 38 in total

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