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PLM3-1_50_b1_sep16_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_225_1
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

3..128
DNA (126bp) protein (42aa)
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_2
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

125..475
DNA (351bp) protein (117aa)
NAD(P) transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2] bin=bin8_Chloro species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
NAD(P) transhydrogenase subunit alpha
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_225_3
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

869..1888
DNA (1020bp) protein (340aa)
NAD(P) transhydrogenase subunit beta bin=GWC2_Chloroflexi_73_18 species=Stackebrandtia nassauensis genus=Stackebrandtia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_225_4
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1932..2999)
DNA (1068bp) protein (356aa)
Uncharacterized protein Tax=Tetrasphaera elongata Lp2 RepID=N0E1C4_9MICO
putative calcium-activated potassium channel (Kef-type K+ transport protein)
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_225_5
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3128..3913)
DNA (786bp) protein (262aa)
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_6
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3919..4383)
DNA (465bp) protein (155aa)
MgtC/SapB transporter bin=GWF2_Lentisphaerae_52_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
MgtC family protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_225_7
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(4417..4905)
DNA (489bp) protein (163aa)
Putative YbaK/EbsC protein Tax=Propionibacterium propionicum (strain F0230a) RepID=I6X4J4_PROPF
putative YbaK/EbsC protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_225_8
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(4919..5668)
DNA (750bp) protein (250aa)
threonyl/alanyl tRNA synthetase SAD; K07050 bin=bin8_Chloro species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
Threonyl/alanyl tRNA synthetase SAD
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_225_9
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5665..6147)
DNA (483bp) protein (161aa)
carbohydrate binding family 6 bin=bin8_Chloro species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin8_Chloro organism_group=Chloroflexi
blue (type1) copper domain-containing protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_10
unknown

Not on your lists

6375..6473
DNA (99bp) protein (33aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_225_11
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(6631..9855)
DNA (3225bp) protein (1075aa)
Transcriptional regulator, LuxR family bin=GWC2_Chloroflexi_73_18 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
LuxR family transcriptional regulator
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_12
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

9957..10898
DNA (942bp) protein (314aa)
hypothetical protein bin=bin8_Chloro species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_13
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(10871..12076)
DNA (1206bp) protein (402aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Burkholderia sp. genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
periplasmic protein TonB links inner and outer membranes-like
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_14
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

12369..13325
DNA (957bp) protein (319aa)
id=14629363 bin=bin8_Chloro tax=bin8_Chloro organism_group=Chloroflexi
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_trna_1
unknown

Not on your lists

comp(13378..13450)
DNA (73bp)
transferRNA Ile
PLM3-1_50_b1_sep16_scaffold_225_15
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(13485..13799)
DNA (315bp) protein (105aa)
id=2876692 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_225_16
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(13968..14369)
DNA (402bp) protein (134aa)
id=2876693 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_17
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(14359..15609)
DNA (1251bp) protein (417aa)
Cysteine desulfurase bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
cysteine desulfurase
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_225_18
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

15617..16465
DNA (849bp) protein (283aa)
Sulfurtransferase bin=GWC2_Chloroflexi_73_18 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
rhodanese domain-containing protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_225_19
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(16479..17057)
DNA (579bp) protein (193aa)
id=14629372 bin=bin8_Chloro tax=bin8_Chloro organism_group=Chloroflexi
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_20
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(17095..18822)
DNA (1728bp) protein (576aa)
Probable DNA ligase bin=GWC2_Chloroflexi_73_18 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
DNA ligase I
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_21
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

18849..19559
DNA (711bp) protein (237aa)
GCN5-related N-acetyltransferase bin=GWC2_Chloroflexi_73_18 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
N-acetyltransferase GCN5
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_22
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

19556..19834
DNA (279bp) protein (93aa)
id=14629375 bin=bin8_Chloro tax=bin8_Chloro organism_group=Chloroflexi
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_23
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20118..20564)
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMT3_TISMK
Membrane protein {ECO:0000313|EMBL:KFG70215.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_225_24
unknown

Not on your lists

comp(20576..20968)
DNA (393bp) protein (131aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_225_25
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

21062..22012
DNA (951bp) protein (317aa)
Luciferase-like monooxygenase superfamily bin=GWC2_Chloroflexi_73_18 species=Halosarcina pallida genus=Halosarcina taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
luciferase family protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_225_26
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22112..22453
DNA (342bp) protein (114aa)
OsmC-like protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IK55_ANADE
OsmC-like protein
OsmC-like protein {ECO:0000313|EMBL:ABC82035.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM3-1_50_b1_sep16_scaffold_225_27
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22459..23646)
DNA (1188bp) protein (396aa)
Uncharacterized protein Tax=Streptomyces sp. HGB0020 RepID=S2YIA5_9ACTO
Alcohol dehydrogenase class IV
Alcohol dehydrogenase class IV {ECO:0000313|EMBL:AHY47356.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3-1_50_b1_sep16_scaffold_225_28
Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23643..23888)
DNA (246bp) protein (82aa)
sarcosine oxidase subunit delta (EC:1.5.3.1)
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:ADE39298.1}; EC=1.5.3.1 {ECO:0000313|EMBL:ADE39298.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster; Candidatus Puniceispirillum.;" source="Puniceispirillum marinum (strain IMCC1322).;"
Sarcosine oxidase delta subunit Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BSQ1_PUNMI
PLM3-1_50_b1_sep16_scaffold_225_29
Bradyrhizobium sp. UASWS1016, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23888..24727)
DNA (840bp) protein (280aa)
sarcosine oxidase subunit beta Tax=Yaniella halotolerans RepID=UPI0003B5561C
Contig94, whole genome shotgun sequence {ECO:0000313|EMBL:KIU57131.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. UASWS1016.;"
FAD dependent oxidoreductase
Displaying items 1-30 of 35 in total

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