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PLM2_5_b1_sep16_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_41_1
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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227..4171
DNA (3945bp) protein (1315aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00158471}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00158471};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
chemotaxis protein Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037466D5
sensory box protein
PLM2_5_b1_sep16_scaffold_41_2
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4193..4624
DNA (432bp) protein (144aa)
DoxX Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IK34_ANADE
DoxX
DoxX {ECO:0000313|EMBL:ABC82014.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM2_5_b1_sep16_scaffold_41_3
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4616..7003)
DNA (2388bp) protein (796aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036C7341
Uncharacterized protein {ECO:0000313|EMBL:KFE70392.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_41_4

Not on your lists

7074..7904
DNA (831bp) protein (277aa)
Retinol dehydrogenase 12 (All-trans and 9-cis retinol dehydrogenase) Tax=uncultured bacterium A1Q1_fos_1266 RepID=L7VT34_9BACT
Retinol dehydrogenase 12 (All-trans and 9-cis retinol dehydrogenase) {ECO:0000313|EMBL:AGC72287.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_1266.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_41_5
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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comp(7888..9042)
DNA (1155bp) protein (385aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase bin=RBG_19FT_COMBO_GAL15_69_19 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM2_5_b1_sep16_scaffold_41_trna_6
unknown

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comp(9061..9142)
DNA (82bp)
transferRNA Leu
PLM2_5_b1_sep16_scaffold_41_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9204..10445
DNA (1242bp) protein (414aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_24 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
chemotaxis protein CheY
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM2_5_b1_sep16_scaffold_41_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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10483..11133
DNA (651bp) protein (217aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_41_8
unknown

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comp(11136..11501)
DNA (366bp) protein (122aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_41_trna_5
unknown

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comp(11506..11578)
DNA (73bp)
transferRNA Lys
PLM2_5_b1_sep16_scaffold_41_trna_4
unknown

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comp(11638..11709)
DNA (72bp)
transferRNA Glu
PLM2_5_b1_sep16_scaffold_41_trna_3
unknown

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comp(11724..11796)
DNA (73bp)
transferRNA Glu
PLM2_5_b1_sep16_scaffold_41_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11897..13093
DNA (1197bp) protein (399aa)
diguanylate cyclase bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Conserved protein of unknown function (membrane protein with a C-terminal Diguanylate cyclase domain)
Tax=CSP1_6_Rokubacteria
PLM2_5_b1_sep16_scaffold_41_10
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13135..14181
DNA (1047bp) protein (349aa)
hypothetical protein Tax=Spirosoma spitsbergense RepID=UPI000365A012
Uncharacterized protein {ECO:0000313|EMBL:EJF09809.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_41_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14178..14942
DNA (765bp) protein (255aa)
Uncharacterized protein Tax=Erythrobacter sp. SD-21 RepID=A5PA99_9SPHN
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_41_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14946..18008
DNA (3063bp) protein (1021aa)
ppk; polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JJX2_SYNJB
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_41_13
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(18005..19261)
DNA (1257bp) protein (419aa)
Uncharacterized protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QIK6_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY57495.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM2_5_b1_sep16_scaffold_41_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19387..19965
DNA (579bp) protein (193aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_41_15
Arthrobacter phenanthrenivorans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20045..21373
DNA (1329bp) protein (443aa)
hypothetical protein Tax=Amycolatopsis benzoatilytica RepID=UPI0003659B94
Phospholipase {ECO:0000313|EMBL:KIC69945.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter phenanthrenivorans.;"
phosphoesterase
PLM2_5_b1_sep16_scaffold_41_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(21374..22663)
DNA (1290bp) protein (430aa)
Amino acid/polyamine/organocation transporter, APC superfamily Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITW7_KORVE
amino acid transporter
Amino acid/polyamine/organocation transporter, APC superfamily {ECO:0000313|EMBL:ABF39683.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM2_5_b1_sep16_scaffold_41_17
bacterium UASB270, Bacteria

Not on your lists

22704..23750
DNA (1047bp) protein (349aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK61479.1}; species="Bacteria.;" source="bacterium UASB270.;"
id=12554872 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM2_5_b1_sep16_scaffold_41_18
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(23775..25196)
DNA (1422bp) protein (474aa)
Repeat-containing protein bin=GWA1_Deltaproteobacteria_52_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
repeat-containing protein
Tax=GWA1_Bdellovibrionales_52_35_curated
PLM2_5_b1_sep16_scaffold_41_19
unknown

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comp(25439..25993)
DNA (555bp) protein (185aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_41_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

26209..26871
DNA (663bp) protein (221aa)
alkyl hydroperoxide reductase (EC:1.11.1.7)
Peroxiredoxin Tax=Microvirga sp. WSM3557 RepID=I4YLH8_9RHIZ
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM2_5_b1_sep16_scaffold_41_trna_2
unknown

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comp(26924..26996)
DNA (73bp)
transferRNA Trp
PLM2_5_b1_sep16_scaffold_41_trna_1
unknown

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comp(27063..27136)
DNA (74bp)
transferRNA His
PLM2_5_b1_sep16_scaffold_41_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(27184..27864)
DNA (681bp) protein (227aa)
pabB; para-aminobenzoate synthase component I (EC:4.1.3.-)
Aminotransferase, class IV Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY00_RUBXD bin=16ft_combo_ws3_JS1 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_41_22
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27912..28958
DNA (1047bp) protein (349aa)
Chromosome undetermined scaffold_13, whole genome shotgun sequence Tax=Paramecium tetraurelia RepID=A0BVE0_PARTE
Uncharacterized protein {ECO:0000313|EMBL:CDR08601.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_41_23
Tetrahymena thermophila, Tetrahymena, Hymenostomatida, Oligohymenophorea, Eukaryota

Not on your lists

28955..30037
DNA (1083bp) protein (361aa)
Putative uncharacterized protein Tax=Tetrahymena thermophila (strain SB210) RepID=Q22RQ7_TETTS
Uncharacterized protein {ECO:0000313|EMBL:EAR88065.1}; species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymenidae; Tetrahymena.;" source="Tetrahymena thermophila (strain SB210).;"
PE-PGRS family protein
PLM2_5_b1_sep16_scaffold_41_24
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(30016..31317)
DNA (1302bp) protein (434aa)
Amino acid/polyamine/organocation transporter, APC superfamily bin=GWF2_Melioribacter_38_21 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
amino acid permease
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
Displaying items 1-30 of 71 in total

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