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PLM2_5_b1_sep16_scaffold_1946

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_1946_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2..958
DNA (957bp) protein (319aa)
Signal recognition particle protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGB3_CHLTF
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
signal recognition particle subunit FFH/SRP54 (srp54)
PLM2_5_b1_sep16_scaffold_1946_2
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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968..1219
DNA (252bp) protein (84aa)
30S ribosomal protein S16 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=RS16_DESAH
rpsP; protein RpsP
30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2).;"
PLM2_5_b1_sep16_scaffold_1946_3
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1238..1471
DNA (234bp) protein (78aa)
UPF0109 protein C808_00209 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K3P2_9FIRM
UPF0109 protein C808_00209 {ECO:0000256|HAMAP-Rule:MF_00088}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1946_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1483..1992
DNA (510bp) protein (170aa)
Ribosome maturation factor RimM Tax=uncultured Acidobacteria bacterium RepID=H5SIU5_9BACT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
16S rRNA processing protein RimM
PLM2_5_b1_sep16_scaffold_1946_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1993..2703
DNA (711bp) protein (237aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
tRNA (guanine-N(1)-)-methyltransferase Tax=uncultured Acidobacteria bacterium RepID=H5SIU4_9BACT
tRNA (guanine-N1)-methyltransferase
PLM2_5_b1_sep16_scaffold_1946_6
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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2690..3115
DNA (426bp) protein (142aa)
50S ribosomal protein L19 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGA8_CHLTF
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM2_5_b1_sep16_scaffold_1946_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3132..3866
DNA (735bp) protein (245aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E5S9_GEOLS
PLM2_5_b1_sep16_scaffold_1946_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3878..4708)
DNA (831bp) protein (277aa)
Beta-lactamase-like protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIH4_KORVE
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:CDM67110.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
beta-lactamase-like protein
PLM2_5_b1_sep16_scaffold_1946_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4705..5490)
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF64_CHIPD">RepID=C7PF64_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:CDM66424.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short-chain dehydrogenase/reductase SDR
PLM2_5_b1_sep16_scaffold_1946_10
GWB1_OD1_40_14, Parcubacteria, Bacteria

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comp(5487..6008)
DNA (522bp) protein (174aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI00037B30C3
Uncharacterized protein {ECO:0000313|EMBL:KKR46574.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_40_14.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1946_11
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(6015..6866)
DNA (852bp) protein (284aa)
Alpha/beta hydrolase fold Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01S09_SOLUE
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABJ87561.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM2_5_b1_sep16_scaffold_1946_12
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(6867..7397)
DNA (531bp) protein (177aa)
GCN5-related N-acetyltransferase Tax=Microcoleus vaginatus FGP-2 RepID=F5UH41_9CYAN
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EGK87529.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
GCN5-related N-acetyltransferase
PLM2_5_b1_sep16_scaffold_1946_13
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(7394..8038)
DNA (645bp) protein (215aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
pyridoxamine 5''''-phosphate oxidase Tax=Fischerella muscicola RepID=UPI000316819C
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM2_5_b1_sep16_scaffold_1946_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8031..9200)
DNA (1170bp) protein (390aa)
Uncharacterized protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AFW1_IGNAJ
Uncharacterized protein {ECO:0000313|EMBL:CDM66422.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1946_15
unknown

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comp(9271..9759)
DNA (489bp) protein (163aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_1946_16
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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9831..10124
DNA (294bp) protein (98aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F644_9NOCA
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM2_5_b1_sep16_scaffold_1946_17
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10343..13789
DNA (3447bp) protein (1149aa)
Uncharacterized protein Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KSS1_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST35162.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
conserved hypothetical protein
Displaying 17 items

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