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PLM2_30_b1_sep16_scaffold_245

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_245_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1..339
DNA (339bp) protein (113aa)
Helicase c2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6W3_9BACT
Helicase c2 {ECO:0000313|EMBL:EDY17914.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
helicase c2
PLM2_30_b1_sep16_scaffold_245_2
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

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393..1448
DNA (1056bp) protein (352aa)
Nucleotidyltransferase/DNA polymerase Tax=uncultured Verrucomicrobia bacterium RepID=D2DXS2_9BACT
Nucleotidyltransferase/DNA polymerase {ECO:0000313|EMBL:ACO70895.1}; species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
DNA repair nucleotidyltransferase/DNA polymerase-like protein
PLM2_30_b1_sep16_scaffold_245_3
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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1481..4756
DNA (3276bp) protein (1092aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
DNA polymerase III, alpha subunit Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EL55_CORAD
DNA polymerase III subunit alpha
PLM2_30_b1_sep16_scaffold_245_4
Bacillus nealsonii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4796..6280)
DNA (1485bp) protein (495aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus nealsonii AAU1.;"
6-phosphogluconate dehydrogenase, decarboxylating Tax=Bacillus nealsonii AAU1 RepID=R9C866_9BACI
6-phosphogluconate dehydrogenase
PLM2_30_b1_sep16_scaffold_245_5
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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6343..6777
DNA (435bp) protein (145aa)
Molybdopterin converting factor, large subunit Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DXY3_METI4
moaE; Molybdopterin converting factor, large subunit
Molybdopterin converting factor, large subunit {ECO:0000313|EMBL:ACD83935.1}; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
PLM2_30_b1_sep16_scaffold_245_6
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6774..7352
DNA (579bp) protein (193aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA (EC:2.7.8.5)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4DB26_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_245_trna_1
unknown

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comp(7638..7708)
DNA (71bp)
transferRNA Gly
PLM2_30_b1_sep16_scaffold_245_7

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comp(7797..9050)
DNA (1254bp) protein (418aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
3-oxoacyl-ACP synthase Tax=Verrucomicrobium spinosum RepID=UPI00017460D6
fabB; 3-oxoacyl-(acyl-carrier-protein) synthase
PLM2_30_b1_sep16_scaffold_245_8

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comp(9159..10337)
DNA (1179bp) protein (393aa)
IMP dehydrogenase family protein Tax=Pedosphaera parvula Ellin514 RepID=B9XPS3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48705.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
guaB; IMP dehydrogenase/GMP reductase
PLM2_30_b1_sep16_scaffold_245_9

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comp(10575..11372)
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP2_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48704.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_30_b1_sep16_scaffold_245_10

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comp(11369..11773)
DNA (405bp) protein (135aa)
Biopolymer transport protein ExbD/TolR Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48703.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_30_b1_sep16_scaffold_245_11

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comp(11810..12454)
DNA (645bp) protein (215aa)
MotA/TolQ/ExbB proton channel Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP4_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48702.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tolQ; MotA/TolQ/ExbB proton channel family protein
PLM2_30_b1_sep16_scaffold_245_12

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comp(12595..13110)
DNA (516bp) protein (172aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48701.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
YD repeat protein bin=GWF2_Bacteroidetes_35_48 species=Capnocytophaga gingivalis genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
PLM2_30_b1_sep16_scaffold_245_13

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13419..13694
DNA (276bp) protein (92aa)
cell division protein MraZ Tax=Lactobacillus suebicus RepID=UPI0002490D35
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
mraZ; cell division mraz protein
PLM2_30_b1_sep16_scaffold_245_14

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13699..14742
DNA (1044bp) protein (348aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Ribosomal RNA small subunit methyltransferase H Tax=Chthoniobacter flavus Ellin428 RepID=B4D203_9BACT
S-adenosyl-methyltransferase MraW
PLM2_30_b1_sep16_scaffold_245_15

Not on your lists

14780..15082
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D202_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48698.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_30_b1_sep16_scaffold_245_16

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15079..16896
DNA (1818bp) protein (606aa)
UDP-N-acetylmuramyl-tripeptide synthetase Tax=Chthoniobacter flavus Ellin428 RepID=B4D201_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48697.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ftsI; Cell division protein FtsI
PLM2_30_b1_sep16_scaffold_245_17

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17081..18448
DNA (1368bp) protein (456aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramyl-tripeptide synthetase Tax=Chthoniobacter flavus Ellin428 RepID=B4D201_9BACT
UDP-N-acetylmuramyl tripeptide synthetase
PLM2_30_b1_sep16_scaffold_245_18

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18486..19880
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4D200_9BACT
PLM2_30_b1_sep16_scaffold_245_19

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19877..20977
DNA (1101bp) protein (367aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z9_9BACT
rfe; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
PLM2_30_b1_sep16_scaffold_245_20

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20974..21357
DNA (384bp) protein (128aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z8_9BACT
UDP-N-acetylmuramoylalanine/D-glutamate ligase
PLM2_30_b1_sep16_scaffold_245_21

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21359..22306
DNA (948bp) protein (316aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z8_9BACT
UDP-N-acetylmuramoylalanine--D-glutamate ligase
PLM2_30_b1_sep16_scaffold_245_22

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22303..22875
DNA (573bp) protein (191aa)
Peptidoglycan-binding LysM Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z7_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48692.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptidoglycan-binding LysM
PLM2_30_b1_sep16_scaffold_245_23

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22927..24069
DNA (1143bp) protein (381aa)
Cell cycle protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z6_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48691.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsW
PLM2_30_b1_sep16_scaffold_245_24

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24126..25223
DNA (1098bp) protein (366aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z5_9BACT
murG; UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
PLM2_30_b1_sep16_scaffold_245_25

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25207..27537
DNA (2331bp) protein (777aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|SAAS:SAAS00041869}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00274693};; EC=1.3.1.98 {ECO:0000256|SAAS:SAAS00057125};; EC=6.3.2.8 {ECO:0000256|SAAS:SAAS00243344};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramate/alanine ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z4_9BACT
UDP-N-acetylmuramate--L-alanine ligase
PLM2_30_b1_sep16_scaffold_245_26

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27537..28472
DNA (936bp) protein (312aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z2_9BACT
PLM2_30_b1_sep16_scaffold_245_27

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28469..29536
DNA (1068bp) protein (356aa)
Polypeptide-transport-associated domain protein FtsQ-type Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z1_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48687.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsQ
PLM2_30_b1_sep16_scaffold_245_28

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29543..30751
DNA (1209bp) protein (403aa)
Cell division protein ftsA Tax=Chthoniobacter flavus RepID=B4D1Z0_9BACT
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsA
PLM2_30_b1_sep16_scaffold_245_29

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30840..32240
DNA (1401bp) protein (467aa)
Cell division protein FtsZ Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Y9_9BACT
Cell division protein FtsZ {ECO:0000256|RuleBase:RU000631}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsZ
Displaying items 1-30 of 37 in total

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