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PLM2_30_b1_sep16_scaffold_1507

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_1507_1
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(92..652)
DNA (561bp) protein (187aa)
Ribosome-recycling factor Tax=Chthoniobacter flavus Ellin428 RepID=B4DCQ4_9BACT
ribosome recycling factor
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_1507_2
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(649..1500)
DNA (852bp) protein (284aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
Uridylate kinase Tax=Methylacidiphilum fumariolicum SolV RepID=I0K065_9BACT
pyrH; uridylate kinase
PLM2_30_b1_sep16_scaffold_1507_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(1626..2585)
DNA (960bp) protein (320aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CYD2_9BACT
PLM2_30_b1_sep16_scaffold_1507_4
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2600..2839)
DNA (240bp) protein (80aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_1507_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2820..3425)
DNA (606bp) protein (202aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Adenylate kinase Tax=Chthoniobacter flavus Ellin428 RepID=B4CYD1_9BACT
adenylate kinase
PLM2_30_b1_sep16_scaffold_1507_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(3483..3788)
DNA (306bp) protein (102aa)
50S ribosomal protein L27 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCG4_9BACT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rpmA; 50S ribosomal protein L27
PLM2_30_b1_sep16_scaffold_1507_7
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3821..4207)
DNA (387bp) protein (129aa)
hypothetical protein Tax=Kordiimonas gwangyangensis RepID=UPI00037C5ED7
50S ribosomal protein L21
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_1507_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4265..5704)
DNA (1440bp) protein (480aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glycogen synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4D6N7_9BACT
glgA; glycogen synthase
PLM2_30_b1_sep16_scaffold_1507_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5757..7076)
DNA (1320bp) protein (440aa)
tRNA adenylyltransferase {ECO:0000313|EMBL:EDY20183.1}; EC=2.7.7.72 {ECO:0000313|EMBL:EDY20183.1};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase (EC:2.7.7.72)
tRNA adenylyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL9_9BACT
PLM2_30_b1_sep16_scaffold_1507_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7170..7637)
DNA (468bp) protein (156aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Lipoprotein signal peptidase Tax=Chthoniobacter flavus Ellin428 RepID=B4CVV9_9BACT
signal peptidase II
PLM2_30_b1_sep16_scaffold_1507_11
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(7781..10216)
DNA (2436bp) protein (812aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
Isoleucine--tRNA ligase Tax=Akkermansia sp. CAG:344 RepID=R7E6K8_9BACT
ileS; Isoleucyl-tRNA synthetase
PLM2_30_b1_sep16_scaffold_1507_12
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10351..10572)
DNA (222bp) protein (74aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
ileS; isoleucine--tRNA ligase (EC:6.1.1.5)
Isoleucine--tRNA ligase Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XY20_9FIRM
PLM2_30_b1_sep16_scaffold_1507_13
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

10760..11521
DNA (762bp) protein (254aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XQ22_9BACT
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM2_30_b1_sep16_scaffold_1507_14

Not on your lists

11577..14420
DNA (2844bp) protein (948aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49067.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TPR repeat-containing serine/threonin protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine kinase
PLM2_30_b1_sep16_scaffold_1507_15
unknown

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14504..14563
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 15 items

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