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PLM2_30_b1_sep16_scaffold_163

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_163_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1..258
DNA (258bp) protein (86aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Peptidyl-prolyl cis-trans isomerase Tax=Pedosphaera parvula Ellin514 RepID=B9XK10_9BACT
cyclophilin type peptidyl-prolyl cis-trans isomerase
PLM2_30_b1_sep16_scaffold_163_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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341..1225
DNA (885bp) protein (295aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4D238_9BACT
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:EDY19278.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
PLM2_30_b1_sep16_scaffold_163_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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1366..2463
DNA (1098bp) protein (366aa)
sodium:dicarboxylate symporter bin=BACIGN_2 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=BACIGN_2 organism_group=Unknown_CP
sodium:dicarboxylate symporter
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM2_30_b1_sep16_scaffold_163_4
Flavobacteriaceae bacterium 3519-10, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2463..2645
DNA (183bp) protein (61aa)
Proton/glutamate or proton/aspartate symport protein Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X2M7_FLAB3
Proton/glutamate or proton/aspartate symport protein
Proton/glutamate or proton/aspartate symport protein {ECO:0000313|EMBL:ACU08690.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae.;" source="Flavobacteriaceae bacterium (strain 3519-10).;"
PLM2_30_b1_sep16_scaffold_163_5
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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2720..3244
DNA (525bp) protein (175aa)
id=14630291 bin=bin8_Chloro tax=bin8_Chloro organism_group=Chloroflexi
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM2_30_b1_sep16_scaffold_163_6
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3420..3845
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C9U8_MYXFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI62098.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM2_30_b1_sep16_scaffold_163_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4009..5073
DNA (1065bp) protein (355aa)
GSCFA domain protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QBX3_SPILD
GSCFA domain-containing protein
GSCFA domain protein {ECO:0000313|EMBL:ADB39708.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM2_30_b1_sep16_scaffold_163_8
unknown

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5267..6916
DNA (1650bp) protein (550aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_163_9

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7000..8562
DNA (1563bp) protein (521aa)
transmembrane_regions 376..398 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Uncharacterized protein {ECO:0000313|EMBL:EKD26161.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
PLM2_30_b1_sep16_scaffold_163_10
Legionella massiliensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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8638..10605
DNA (1968bp) protein (656aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ79052.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella massiliensis.;"
PLM2_30_b1_sep16_scaffold_163_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10617..11360)
DNA (744bp) protein (248aa)
lipopolysaccharide biosynthesis protein Tax=Rhizobium leguminosarum RepID=UPI0003735974
FkbM family methyltransferase protein
FkbM family methyltransferase protein {ECO:0000313|EMBL:AJC78371.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
PLM2_30_b1_sep16_scaffold_163_12
unknown

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11666..13183
DNA (1518bp) protein (506aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_163_13
unknown

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comp(13241..13465)
DNA (225bp) protein (75aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_163_14
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13462..14184)
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK09737.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral taxon BU063 isolate Cell 1/3.;"
Putative uncharacterized protein bin=GWF2_Geobacter_54_21 species=Croceibacter atlanticus genus=Croceibacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
type 11 methyltransferase
PLM2_30_b1_sep16_scaffold_163_15
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14258..15661)
DNA (1404bp) protein (468aa)
Probable glycosyltransferase protein bin=GWF2_Lentisphaerae_52_8 species=Rhizobium etli genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Glycosyl transferase {ECO:0000313|EMBL:EJJ28057.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
glycosyltransferase family 2 protein
PLM2_30_b1_sep16_scaffold_163_16

Not on your lists

comp(16117..16863)
DNA (747bp) protein (249aa)
glycosyl transferase Tax=Spirulina subsalsa RepID=UPI00031BACE1
Uncharacterized protein {ECO:0000313|EMBL:KKL96171.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
family 2 glycosyl transferase
PLM2_30_b1_sep16_scaffold_163_17
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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16977..18575
DNA (1599bp) protein (533aa)
Acyltransferase Tax=Leptotrichia sp. oral taxon 879 str. F0557 RepID=U2REW1_9FUSO
Tax=RBG_13_WOR_2_41_10_curated
PLM2_30_b1_sep16_scaffold_163_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18829..21753
DNA (2925bp) protein (975aa)
Excinuclease ABC, A subunit Tax=Chthoniobacter flavus Ellin428 RepID=B4CUG1_9BACT
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
uvrA; excinuclease ABC subunit A
PLM2_30_b1_sep16_scaffold_163_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

21774..24197
DNA (2424bp) protein (808aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CUG2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY22200.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_163_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(24732..26513)
DNA (1782bp) protein (594aa)
Acyl-CoA dehydrogenase domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DCF1_9BACT
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EDY15900.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
acyl-CoA dehydrogenase
PLM2_30_b1_sep16_scaffold_163_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(26658..29039)
DNA (2382bp) protein (794aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:EDY19934.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EDY19934.1};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Tax=Chthoniobacter flavus Ellin428 RepID=B4D0S2_9BACT
ribonucleoside-diphosphate reductase
Displaying 21 items

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