ggKbase home page

PLM2_30_b1_sep16_scaffold_169

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_169_1
unknown

Not on your lists

3..488
DNA (486bp) protein (162aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_169_2

Not on your lists

600..1460
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D2B6_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49269.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_30_b1_sep16_scaffold_169_3
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

1552..2580
DNA (1029bp) protein (343aa)
Uncharacterized protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNS4_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB75444.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM2_30_b1_sep16_scaffold_169_4
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

2691..3710
DNA (1020bp) protein (340aa)
D-alanine--D-alanine ligase domain protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNS5_OPITP
D-alanine--D-alanine ligase
D-alanine--D-alanine ligase domain protein {ECO:0000313|EMBL:ACB75445.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM2_30_b1_sep16_scaffold_169_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(3729..5279)
DNA (1551bp) protein (517aa)
Glycosyl transferase, family 39 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TZ0_SOLUE
glycosyl transferase family protein
Glycosyl transferase, family 39 {ECO:0000313|EMBL:ABJ86880.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM2_30_b1_sep16_scaffold_169_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5325..5738
DNA (414bp) protein (138aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Pedosphaera parvula Ellin514 RepID=B9XT23_9BACT
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EEF57013.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative glyoxalase
PLM2_30_b1_sep16_scaffold_169_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

5743..6255
DNA (513bp) protein (171aa)
hypothetical protein Tax=Rudanella lutea RepID=UPI0003775A39
GCN5-related N-acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM2_30_b1_sep16_scaffold_169_8
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6301..7029
DNA (729bp) protein (243aa)
Glycosyl transferase family 2 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ23_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM2_30_b1_sep16_scaffold_169_9
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7109..7372
DNA (264bp) protein (88aa)
30S ribosomal protein S15 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3S0_9BACT
30S ribosomal protein S15
Tax=CG_Delta_05
PLM2_30_b1_sep16_scaffold_169_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7592..9724
DNA (2133bp) protein (711aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4D3R8_9BACT
PLM2_30_b1_sep16_scaffold_169_11
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9901..10473)
DNA (573bp) protein (191aa)
Esterase bin=GWC2_Ignavibacteria_38_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
PLM2_30_b1_sep16_scaffold_169_12
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10802..11602
DNA (801bp) protein (267aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MRV0_CORCM
Putative alpha-dextrin endo-1, 6-alpha-glucosidase {ECO:0000313|EMBL:KFE72130.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_169_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11740..12591)
DNA (852bp) protein (284aa)
Uncharacterized protein bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM2_30_b1_sep16_scaffold_169_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(12545..13531)
DNA (987bp) protein (329aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
acetyl-CoA carboxylase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha Tax=Chthoniobacter flavus Ellin428 RepID=B4CW39_9BACT
PLM2_30_b1_sep16_scaffold_169_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13627..14469)
DNA (843bp) protein (281aa)
Peptidoglycan-binding LysM Tax=Chthoniobacter flavus Ellin428 RepID=B4CW40_9BACT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EDY21632.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_169_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14634..15092)
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZC8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20819.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_169_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15271..15633)
DNA (363bp) protein (121aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM2_30_b1_sep16_scaffold_169_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15783..18170
DNA (2388bp) protein (796aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D235_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19275.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_169_19
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18277..19158
DNA (882bp) protein (294aa)
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R954_AMMDK
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_169_20
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19264..19620)
DNA (357bp) protein (119aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI000316367A
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM2_30_b1_sep16_scaffold_169_21
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

comp(19688..20953)
DNA (1266bp) protein (422aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=uncultured Verrucomicrobia bacterium RepID=D2DXT1_9BACT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
PLM2_30_b1_sep16_scaffold_169_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(20946..21788)
DNA (843bp) protein (281aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Release factor glutamine methyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CY64_9BACT
protein-(glutamine-N5) methyltransferase
PLM2_30_b1_sep16_scaffold_169_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(21817..22896)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY56_9BACT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
peptide chain release factor 1
PLM2_30_b1_sep16_scaffold_169_24
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(22965..23192)
DNA (228bp) protein (76aa)
50S ribosomal protein L31 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY55_9BACT
rpmE; ribosomal protein L31
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_169_25
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

23243..24670
DNA (1428bp) protein (476aa)
AMP-dependent synthetase and ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4CY54_9BACT
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EDY21202.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative long-chain-fatty-acid-CoA ligase
PLM2_30_b1_sep16_scaffold_169_26
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

24723..25601
DNA (879bp) protein (293aa)
Response regulator receiver protein Tax=uncultured Verrucomicrobia bacterium RepID=D2DXX3_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:ACO70946.1}; species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
PLM2_30_b1_sep16_scaffold_169_27
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25695..26387
DNA (693bp) protein (231aa)
Polyphosphate glucokinase Tax=Blastopirellula marina DSM 3645 RepID=A3ZY39_9PLAN
Polyphosphate glucokinase {ECO:0000313|EMBL:EAQ78501.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
ROK family protein
PLM2_30_b1_sep16_scaffold_169_28
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26372..27265
DNA (894bp) protein (298aa)
Uncharacterized protein Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7R8P5_KANKD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV25908.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125).;"
PLM2_30_b1_sep16_scaffold_169_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27275..27919)
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XP07_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58473.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying 29 items

View Taxonomy