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PLM2_30_b1_sep16_scaffold_223

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_223_1
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..646
DNA (645bp) protein (215aa)
FAD dependent oxidoreductase Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2T6K9_9NOCA
FAD dependent oxidoreductase {ECO:0000313|EMBL:ELB86282.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
phytoene dehydrogenase
PLM2_30_b1_sep16_scaffold_223_2
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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815..1333
DNA (519bp) protein (173aa)
FAD dependent oxidoreductase Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2T6K9_9NOCA
FAD dependent oxidoreductase {ECO:0000313|EMBL:ELB86282.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
FAD dependent oxidoreductase
PLM2_30_b1_sep16_scaffold_223_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1293..2051
DNA (759bp) protein (253aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7P1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17531.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_223_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2048..2902
DNA (855bp) protein (285aa)
ABC transporter-related protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7P0_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY17530.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter-like protein
PLM2_30_b1_sep16_scaffold_223_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2899..3780
DNA (882bp) protein (294aa)
Mammalian cell entry related domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7N9_9BACT
Mammalian cell entry related domain protein {ECO:0000313|EMBL:EDY17529.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_223_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3943..4485
DNA (543bp) protein (181aa)
hypothetical protein Tax=Verrucomicrobium spinosum RepID=UPI0001744ED1
Uncharacterized protein {ECO:0000313|EMBL:EDY19451.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_223_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(4627..5361)
DNA (735bp) protein (245aa)
putative glycosyltransferase (EC:2.4.-.-)
Glycosyl transferase family 2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D738_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EDY17689.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_223_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5358..6248)
DNA (891bp) protein (297aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Lipoyl synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4D740_9BACT
lipoyl synthase
PLM2_30_b1_sep16_scaffold_223_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6388..6891)
DNA (504bp) protein (168aa)
Recombination protein RecR Tax=Chthoniobacter flavus Ellin428 RepID=B4D3F8_9BACT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
recombination protein RecR
PLM2_30_b1_sep16_scaffold_223_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7037..8284)
DNA (1248bp) protein (416aa)
Putative adenylate/guanylate cyclase Tax=Chthoniobacter flavus Ellin428 RepID=B4D3F7_9BACT
Putative adenylate/guanylate cyclase {ECO:0000313|EMBL:EDY19268.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
adenylate cyclase
PLM2_30_b1_sep16_scaffold_223_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8291..9901)
DNA (1611bp) protein (537aa)
ATPase AAA-2 domain protein Tax=Verrucomicrobium spinosum RepID=UPI000174441D
ATPase AAA-2 domain protein {ECO:0000313|EMBL:EEF63439.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
clpX; ATP-dependent protease Clp, ATPase subunit
PLM2_30_b1_sep16_scaffold_223_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10007..10954
DNA (948bp) protein (316aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
RluA family pseudouridine synthase (EC:3.2.1.17)
Pseudouridine synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4CUQ4_9BACT
PLM2_30_b1_sep16_scaffold_223_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10968..11450)
DNA (483bp) protein (161aa)
Uncharacterized protein Tax=Azospirillum brasilense Sp245 RepID=G8ANI5_AZOBR
MaoC family dehydratase {ECO:0000313|EMBL:EWY39721.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
conserved protein of unknown function; putative MaoC dehydratase domain
PLM2_30_b1_sep16_scaffold_223_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(12010..13812)
DNA (1803bp) protein (601aa)
GTP-binding protein TypA Tax=Chthoniobacter flavus Ellin428 RepID=B4DAM9_9BACT
GTP-binding protein TypA {ECO:0000313|EMBL:EDY16547.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GTP-binding protein
PLM2_30_b1_sep16_scaffold_223_15
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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14090..14542
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MX72_CORCM
Tail protein {ECO:0000313|EMBL:KFA94335.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_223_16
R_OD1_Falkowbacteria_39_8, Falkowbacteria, Parcubacteria, Bacteria

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14608..14931
DNA (324bp) protein (108aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Falkowbacteria_39_8_curated
PLM2_30_b1_sep16_scaffold_223_17
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(15223..15666)
DNA (444bp) protein (148aa)
hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Ignavibacteria_35_7_curated
PLM2_30_b1_sep16_scaffold_223_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15856..16440)
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7K2_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH88450.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM2_30_b1_sep16_scaffold_223_trna_1
unknown

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16738..16809
DNA (72bp)
transferRNA Val
PLM2_30_b1_sep16_scaffold_223_19

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comp(16886..17581)
DNA (696bp) protein (232aa)
Aspartate racemase Tax=Clostridium pasteurianum BC1 RepID=R4KCP7_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:KKK81402.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
aspartate racemase
PLM2_30_b1_sep16_scaffold_223_20
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17740..18894
DNA (1155bp) protein (385aa)
Major facilitator superfamily MFS_1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U7Z8_9CYAN
Major facilitator superfamily MFS_1
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM2_30_b1_sep16_scaffold_223_21
unknown

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comp(18957..19316)
DNA (360bp) protein (120aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_223_22
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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19361..21070
DNA (1710bp) protein (570aa)
hypothetical protein
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=BJP_IG2158_Zixibacteria_48_33
PLM2_30_b1_sep16_scaffold_223_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(21141..22304)
DNA (1164bp) protein (388aa)
Type I phosphodiesterase/nucleotide pyrophosphatase Tax=Pedosphaera parvula Ellin514 RepID=B9XSR7_9BACT
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:EEF57119.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Type I phosphodiesterase/nucleotide pyrophosphatase
Displaying 24 items

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