ggKbase home page

PLM2_30_b1_sep16_scaffold_272

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_272_trna_1
unknown

Not on your lists

204..276
DNA (73bp)
transferRNA Ala
PLM2_30_b1_sep16_scaffold_272_1
unknown

Not on your lists

292..489
DNA (198bp) protein (66aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_272_trna_2
unknown

Not on your lists

862..935
DNA (74bp)
transferRNA Ile
PLM2_30_b1_sep16_scaffold_272_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(990..2399)
DNA (1410bp) protein (470aa)
Membrane bound O-acyl transferase, MBOAT family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A32_SOLUE
MBOAT family membrane bound O-acyl transferase
Membrane bound O-acyl transferase, MBOAT family protein {ECO:0000313|EMBL:ABJ82094.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM2_30_b1_sep16_scaffold_272_3
unknown

Not on your lists

comp(2435..4231)
DNA (1797bp) protein (599aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_272_4
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4291..4776)
DNA (486bp) protein (162aa)
VanZ family protein Tax=Pedosphaera parvula Ellin514 RepID=B9XPA0_9BACT
hypothetical protein
Tax=BJP_IG2069_Syntrophobacterales_47_18
PLM2_30_b1_sep16_scaffold_272_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

4918..5823
DNA (906bp) protein (302aa)
Mannose-6-phosphate isomerase type I Tax=Chthoniobacter flavus Ellin428 RepID=B4CZR7_9BACT
Mannose-6-phosphate isomerase type I {ECO:0000313|EMBL:EDY20231.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Mannose-6-phosphate isomerase
PLM2_30_b1_sep16_scaffold_272_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6072..6380)
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZR9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20233.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_272_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6452..7186)
DNA (735bp) protein (245aa)
Alanine racemase domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZS0_9BACT
Alanine racemase domain protein {ECO:0000313|EMBL:EDY20234.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
alanine racemase domain protein
PLM2_30_b1_sep16_scaffold_272_8
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7321..7614
DNA (294bp) protein (98aa)
hypothetical protein Tax=Verrucomicrobium spinosum RepID=UPI0001744ED0
Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
PLM2_30_b1_sep16_scaffold_272_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7855..8583)
DNA (729bp) protein (243aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM2_30_b1_sep16_scaffold_272_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8773..9147
DNA (375bp) protein (125aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DBG6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16256.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_272_11
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9249..9581)
DNA (333bp) protein (111aa)
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM2_30_b1_sep16_scaffold_272_12
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9603..10676)
DNA (1074bp) protein (358aa)
transmembrane_regions bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM2_30_b1_sep16_scaffold_272_13
unknown

Not on your lists

10789..10902
DNA (114bp) protein (38aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_272_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10892..11878
DNA (987bp) protein (329aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZJ4_9BACT
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EDY20158.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ErfK/YbiS/YcfS/YnhG family protein
PLM2_30_b1_sep16_scaffold_272_15
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

11889..12473
DNA (585bp) protein (195aa)
Metal dependent phosphohydrolase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UYW1_ROSS1
metal dependent phophohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABQ91814.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM2_30_b1_sep16_scaffold_272_16
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(12515..13330)
DNA (816bp) protein (272aa)
hypothetical protein SCB02_01843 bin=GWF2_Ignavibacteria_35_20 species=Synechococcus sp. CB0205 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM2_30_b1_sep16_scaffold_272_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13430..13930
DNA (501bp) protein (167aa)
Gcn5-related n-acetyltransferase Tax=Leptolyngbya sp. Heron Island J RepID=U9W252_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33494.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM2_30_b1_sep16_scaffold_272_18
unknown

Not on your lists

13987..14679
DNA (693bp) protein (231aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_272_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14749..15966
DNA (1218bp) protein (406aa)
Riboflavin biosynthesis protein RibBA Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X7_9BACT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase
PLM2_30_b1_sep16_scaffold_272_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15974..16450
DNA (477bp) protein (159aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X6_9BACT
6,7-dimethyl-8-ribityllumazine synthase
PLM2_30_b1_sep16_scaffold_272_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

16456..16896
DNA (441bp) protein (147aa)
N utilization substance protein B homolog Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NusB antitermination factor
PLM2_30_b1_sep16_scaffold_272_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

16963..17811
DNA (849bp) protein (283aa)
Signal recognition particle receptor FtsY Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X4_9BACT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
signal recognition particle-docking protein FtsY
PLM2_30_b1_sep16_scaffold_272_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17827..19341
DNA (1515bp) protein (505aa)
Major facilitator superfamily MFS_1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLY0_9BACT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EEF59108.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
major facilitator superfamily protein
PLM2_30_b1_sep16_scaffold_272_24
bacterium UASB14, Bacteria

Not on your lists

19557..20174
DNA (618bp) protein (206aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; species="Bacteria.;" source="bacterium UASB14.;"
methionine sulfoxide reductase Tax=Desulfospira joergensenii RepID=UPI0003B6D74A
Peptide methionine sulfoxide reductase msrB
PLM2_30_b1_sep16_scaffold_272_25
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

20300..20761
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CW41_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21633.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
Displaying 27 items

View Taxonomy