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PLM2_30_b1_sep16_scaffold_503

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_503_1
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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1..585
DNA (585bp) protein (195aa)
glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase bin=GWF2_Lentisphaerae_57_35 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Tax=GWF2_Lentisphaerae_57_35_curated
PLM2_30_b1_sep16_scaffold_503_2
Anopheles sinensis, Anopheles, Diptera, Neoptera, Arthropoda, Metazoa

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671..1102
DNA (432bp) protein (144aa)
AGAP002879-PB-like protein {ECO:0000313|EMBL:KFB38327.1}; species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles.;" source="Anopheles sinensis.;"
PLM2_30_b1_sep16_scaffold_503_3
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1131..1868)
DNA (738bp) protein (246aa)
Glycosyl transferase family 2 bin=GWF2_Syntrophobacterales_56_9 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
family 2 glycosyl transferase
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM2_30_b1_sep16_scaffold_503_4
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1960..2844
DNA (885bp) protein (295aa)
Histone deacetylase family, putative Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQC6_9BACT
Histone deacetylase family, putative {ECO:0000313|EMBL:EDY83114.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
histone deacetylase superfamily protein
PLM2_30_b1_sep16_scaffold_503_5
Rhodococcus sp. DK17, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2824..3423)
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Rhodococcus RepID=I0WTT5_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:ABP48128.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. DK17.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_503_trna_1
unknown

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3344..3417
DNA (74bp)
transferRNA Pro
PLM2_30_b1_sep16_scaffold_503_6

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3824..4954
DNA (1131bp) protein (377aa)
Ribosome-binding ATPase YchF Tax=Chthoniobacter flavus Ellin428 RepID=B4CVR0_9BACT
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
GTP-binding protein YchF
PLM2_30_b1_sep16_scaffold_503_7

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comp(5038..5742)
DNA (705bp) protein (235aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D3I4_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48617.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_503_8

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comp(6137..6565)
DNA (429bp) protein (143aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003728AFF
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48615.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_30_b1_sep16_scaffold_503_9

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comp(6562..8568)
DNA (2007bp) protein (669aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002EF6461
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48614.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptide transporter
PLM2_30_b1_sep16_scaffold_503_10

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comp(8682..9782)
DNA (1101bp) protein (367aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Beta-N-acetylhexosaminidase Tax=Chthoniobacter flavus Ellin428 RepID=B4CZU1_9BACT
bglX; Beta-glucosidase-related glycosidase
PLM2_30_b1_sep16_scaffold_503_11

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9798..10397
DNA (600bp) protein (200aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Probable nicotinate-nucleotide adenylyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CZU0_9BACT
Nicotinate-nucleotide adenylyltransferase
PLM2_30_b1_sep16_scaffold_503_12
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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10463..10753
DNA (291bp) protein (97aa)
iojap-like protein Tax=Verrucomicrobium spinosum RepID=UPI0001745DE2
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_503_13

Not on your lists

comp(10855..11610)
DNA (756bp) protein (252aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Peptidyl-prolyl cis-trans isomerase bin=GWC2_Deltaproteobacteria_66_88 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
FKBP-type peptidylprolyl cis-trans isomerase
PLM2_30_b1_sep16_scaffold_503_14

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11731..12513
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DBE3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48610.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_503_15

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12503..13138
DNA (636bp) protein (212aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZT3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48609.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ErfK/YbiS/YcfS/YnhG family protein
PLM2_30_b1_sep16_scaffold_503_16

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comp(13192..14427)
DNA (1236bp) protein (412aa)
CinA-like protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZT4_9BACT
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
competence/damage-inducible protein CinA
PLM2_30_b1_sep16_scaffold_503_17

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comp(14533..15813)
DNA (1281bp) protein (427aa)
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Chthoniobacter flavus Ellin428 RepID=B4D1C5_9BACT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
PLM2_30_b1_sep16_scaffold_503_18

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comp(15839..16540)
DNA (702bp) protein (234aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
endopeptidase Clp (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit Tax=Chthoniobacter flavus Ellin428 RepID=B4D1C4_9BACT
PLM2_30_b1_sep16_scaffold_503_19

Not on your lists

comp(16537..17874)
DNA (1338bp) protein (446aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Trigger factor Tax=Chthoniobacter flavus Ellin428 RepID=B4D1C3_9BACT
trigger factor
PLM2_30_b1_sep16_scaffold_503_20

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comp(17907..18113)
DNA (207bp) protein (69aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
imidazolonepropionase (EC:3.5.2.7)
Imidazolonepropionase Tax=Solibacter usitatus (strain Ellin6076) RepID=HUTI_SOLUE
Displaying 21 items

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