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PLM2_30_coex_sep16_scaffold_1351

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_coex_sep16_scaffold_1351_1
Streptomyces somaliensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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3..698
-----------------
DNA (696bp)
protein (232aa)
REX family transcriptional regulator Tax=Streptomyces somaliensis RepID=UPI00029A56D5
redox-sensing transcriptional repressor Rex
PLM2_30_coex_sep16_scaffold_1351_2
unknown

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comp(738..848)
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

PLM2_30_coex_sep16_scaffold_1351_3
unknown

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comp(861..1604)
-----------------
DNA (744bp)
protein (248aa)

This feature has no annotations

PLM2_30_coex_sep16_scaffold_1351_4
unknown

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comp(1601..2335)
-----------------
DNA (735bp)
protein (245aa)

This feature has no annotations

PLM2_30_coex_sep16_scaffold_1351_5
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(2346..3083)
-----------------
DNA (738bp)
protein (246aa)
hypothetical protein Tax=Candidatus Microthrix parvicella RepID=UPI00036CA257
putative iron-sulfur protein
PLM2_30_coex_sep16_scaffold_1351_6
actinobacterium SCGC AAA015-D07, Actinobacteria, Actinobacteria, Bacteria

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comp(3080..3910)
-----------------
DNA (831bp)
protein (277aa)
hypothetical protein Tax=actinobacterium SCGC AAA015-D07 RepID=UPI00037480E0
putative menaquinol-cytochrome c reductase cytochrome b subunit
PLM2_30_coex_sep16_scaffold_1351_7
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3919..4689)
-----------------
DNA (771bp)
protein (257aa)
Putative menaquinol-cytochrome c reductase cytochrome b subunit Tax=Ilumatobacter coccineus YM16-304 RepID=M5AGV0_9ACTN
putative menaquinol-cytochrome c reductase cytochrome b subunit
PLM2_30_coex_sep16_scaffold_1351_8
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(4716..5114)
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z5R8_9ACTN
putative 4Fe-4S ferredoxin
PLM2_30_coex_sep16_scaffold_1351_9
unknown

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comp(5146..5496)
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

PLM2_30_coex_sep16_scaffold_1351_10
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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5632..6384
-----------------
DNA (753bp)
protein (251aa)
Cytochrome c-type biogenesis protein CcdA thiol-disulfide oxido-reductase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RQ46_BLASD
cytochrome C biogenesis protein, transmembrane region
PLM2_30_coex_sep16_scaffold_1351_11
Streptomyces vitaminophilus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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6429..7982
-----------------
DNA (1554bp)
protein (518aa)
hypothetical protein Tax=Streptomyces vitaminophilus RepID=UPI000362D9E5
Cytochrome C biogenesis membrane protein
PLM2_30_coex_sep16_scaffold_1351_12
Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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7979..8914
-----------------
DNA (936bp)
protein (312aa)
Cytochrome c-type biogenesis protein CcsB Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AVJ4_FRADG
cytochrome c-type biogenesis protein CcsB
PLM2_30_coex_sep16_scaffold_1351_13
Chloroflexi bacterium SCGC AB-629-P13, Chloroflexi, Bacteria

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8914..10035
-----------------
DNA (1122bp)
protein (374aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI00037401EB
cytochrome c oxidase subunit II
PLM2_30_coex_sep16_scaffold_1351_14
actinobacterium SCGC AAA015-M09, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10052..11950
-----------------
DNA (1899bp)
protein (633aa)
putative cytochrome c oxidase subunit I/subunit III (EC:1.9.3.1)
hypothetical protein Tax=actinobacterium SCGC AAA015-M09 RepID=UPI00037CE9F5
PLM2_30_coex_sep16_scaffold_1351_15
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

11959..12561
-----------------
DNA (603bp)
protein (201aa)
Cytochrome c oxidase subunit III Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C451_SPHTD
cytochrome c oxidase subunit III
PLM2_30_coex_sep16_scaffold_1351_16
unknown

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12571..12909
-----------------
DNA (339bp)
protein (113aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
PLM2_30_coex_sep16_scaffold_1351_17
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

12906..13745
-----------------
DNA (840bp)
protein (280aa)
Uncharacterized protein Tax=Ilumatobacter coccineus YM16-304 RepID=M5A5V0_9ACTN
hypothetical protein
PLM2_30_coex_sep16_scaffold_1351_18
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13742..15010
-----------------
DNA (1269bp)
protein (423aa)
Blue (Type 1) copper domain protein Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7KDT6_METBM
blue (type 1) copper domain protein
PLM2_30_coex_sep16_scaffold_1351_19
Nocardiopsis potens, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15112..15483
-----------------
DNA (372bp)
protein (124aa)
hypothetical protein Tax=Nocardiopsis potens RepID=UPI000344BC52
Redoxin domain-containing protein
PLM2_30_coex_sep16_scaffold_1351_20
unknown

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comp(15490..16929)
-----------------
DNA (1440bp)
protein (480aa)
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Displaying 20 items

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