ggKbase home page

PLM2_30_coex_sep16_scaffold_606

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_coex_sep16_scaffold_606_1
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..745)
DNA (744bp) protein (248aa)
Collagen triple helix repeat protein Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W536_DESOD
collagen triple helix repeat protein
PLM2_30_coex_sep16_scaffold_606_2
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1154..1753
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0KVE4_9ACTO
hypothetical protein
PLM2_30_coex_sep16_scaffold_606_3
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

1825..2451
DNA (627bp) protein (209aa)
Hypothetical conserved protein Tax=uncultured Acidobacteria bacterium RepID=H5SDC6_9BACT
hypothetical protein
PLM2_30_coex_sep16_scaffold_606_4
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2960..3907)
DNA (948bp) protein (316aa)
Methyltransferase type 11 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WX98_HALHL
type 11 methyltransferase
PLM2_30_coex_sep16_scaffold_606_5
unknown

Not on your lists

comp(4247..5368)
DNA (1122bp) protein (374aa)
Glycosyl transferase family 2 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RT09_ACCPU
family 2 glycosyl transferase
PLM2_30_coex_sep16_scaffold_606_6

Not on your lists

comp(5528..8368)
DNA (2841bp) protein (947aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2DJQ8_9BACT
putative oxidoreductase
PLM2_30_coex_sep16_scaffold_606_7
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8401..10833)
DNA (2433bp) protein (811aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z065_9ACTN
hypothetical protein
PLM2_30_coex_sep16_scaffold_606_8
Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10866..11522
DNA (657bp) protein (219aa)
Putative two-component system regulator Tax=Streptomyces scabies (strain 87.22) RepID=C9YYQ4_STRSW
two-component system regulator
PLM2_30_coex_sep16_scaffold_606_9
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11548..12261)
DNA (714bp) protein (238aa)
50S ribosomal protein L1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y4Z1_THEBD
50S ribosomal protein L1
PLM2_30_coex_sep16_scaffold_606_10
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12258..12686)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=RL11_ACIC1
50S ribosomal protein L11
PLM2_30_coex_sep16_scaffold_606_11
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12689..13777)
DNA (1089bp) protein (363aa)
Transcription termination/antitermination protein NusG Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0F0_9ACTN
nusG; transcription antitermination protein NusG
PLM2_30_coex_sep16_scaffold_606_12
Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13797..14093)
DNA (297bp) protein (99aa)
Protein translocase subunit SecE Tax=Candidatus Microthrix RepID=R4Z634_9ACTN
preprotein translocase subunit SecE
PLM2_30_coex_sep16_scaffold_606_trna_1
unknown

Not on your lists

comp(14115..14188)
DNA (74bp)
transferRNA Trp
PLM2_30_coex_sep16_scaffold_606_13
unknown

Not on your lists

14371..16002
DNA (1632bp) protein (544aa)

This feature has no annotations

PLM2_30_coex_sep16_scaffold_606_14
unknown

Not on your lists

comp(16007..16369)
DNA (363bp) protein (121aa)

This feature has no annotations

PLM2_30_coex_sep16_scaffold_606_15
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16359..16910)
DNA (552bp) protein (184aa)
RNA polymerase sigma24 factor Tax=Arenimonas oryziterrae RepID=UPI0003B34745
RNA polymerase sigma24 factor
PLM2_30_coex_sep16_scaffold_606_16
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16936..17373)
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Nocardia brasiliensis ATCC 700358 RepID=K0EVJ0_9NOCA
hypothetical protein
PLM2_30_coex_sep16_scaffold_606_17
Amycolatopsis sp. ATCC 39116, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17373..17759)
DNA (387bp) protein (129aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026289B7
acyl dehydratase
PLM2_30_coex_sep16_scaffold_606_18
Patulibacter americanus, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(17771..18619)
DNA (849bp) protein (283aa)
3-oxoacyl-ACP reductase Tax=Patulibacter americanus RepID=UPI0003B40C4C
short-chain dehydrogenase/reductase SDR
PLM2_30_coex_sep16_scaffold_606_19
unknown

Not on your lists

18667..19371
DNA (705bp) protein (235aa)
LuxR family transcriptional regulator bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
LuxR family two component transcriptional regulator
PLM2_30_coex_sep16_scaffold_606_20
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists


comp(19384..19548)
DNA (165bp) protein (55aa)
50S ribosomal protein L33 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M2V7_ACIFD
50S ribosomal protein L33
PLM2_30_coex_sep16_scaffold_606_21
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(19556..19693)
DNA (138bp) protein (46aa)
Elongation factor Tu Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZXT7_9ACTN
translation elongation factor Tu
Displaying 22 items

View Taxonomy