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PLM2_5_b1_sep16_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_40_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

151..360
DNA (210bp) protein (70aa)
Cold shock protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Q1_GEMAT
Cold-shock protein DNA-binding protein
Cold-shock protein DNA-binding protein {ECO:0000313|EMBL:AHG89448.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_40_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

464..889
DNA (426bp) protein (142aa)
Putative uncharacterized protein Tax=Burkholderia dolosa AUO158 RepID=A2WBA7_9BURK
protein of unknown function UPF0074
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_40_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(886..2304)
DNA (1419bp) protein (473aa)
pleD; pleD gene product; K02488 two-component system, cell cycle response regulator bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diguanylate cyclase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM2_5_b1_sep16_scaffold_40_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2391..3020)
DNA (630bp) protein (210aa)
hypothetical protein Tax=Spirosoma luteum RepID=UPI00035EA4C2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89342.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_40_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(3119..4360)
DNA (1242bp) protein (414aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE85585.1}; species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Probable lipoprotein bin=GWC2_Ignavibacteria_56_12 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
PLM2_5_b1_sep16_scaffold_40_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4537..5754)
DNA (1218bp) protein (406aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036629FB
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG88245.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_40_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5837..6241
DNA (405bp) protein (135aa)
DoxX family protein; K15977 putative oxidoreductase bin=bin3_NC10 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
DoxX family protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_40_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

6238..7251
DNA (1014bp) protein (338aa)
Streptogramin lyase Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MKG0_RHOM4
streptogramin lyase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_40_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7268..7792
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SK49_RHOMR
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM2_5_b1_sep16_scaffold_40_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

8168..9304
DNA (1137bp) protein (379aa)
Cell cycle histidine kinase CckA Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08V63_STIAD
sensor protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_40_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9255..10883)
DNA (1629bp) protein (543aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A762_GEMAT
metal dependent phosphohydrolase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_40_12
unknown

Not on your lists

comp(10867..11397)
DNA (531bp) protein (177aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_40_13
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11394..12305)
DNA (912bp) protein (304aa)
Response regulator/GGDEF domain-containing protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CPM4_MYXFH
response regulator/GGDEF domain-containing protein
Response regulator/GGDEF domain-containing protein {ECO:0000313|EMBL:AEI69164.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM2_5_b1_sep16_scaffold_40_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12491..15169)
DNA (2679bp) protein (893aa)
putative membrane associated hydrolase
membrane associated hydrolase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_40_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15326..16684
DNA (1359bp) protein (453aa)
Putative multidrug resistance protein MdtK Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3W0_GEMAT
mdtK; putative multidrug resistance protein MdtK
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_40_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

16701..17261
DNA (561bp) protein (187aa)
hypothetical protein; K03744 LemA protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM2_5_b1_sep16_scaffold_40_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

17303..18973
DNA (1671bp) protein (557aa)
hypothetical protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM2_5_b1_sep16_scaffold_40_18
unknown

Not on your lists

comp(18981..19292)
DNA (312bp) protein (104aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_40_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

19454..19738
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8T8_SINAD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM2_5_b1_sep16_scaffold_40_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19753..21339)
DNA (1587bp) protein (529aa)
Putative serine/threonine protein kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC16_GEMAT
protein kinase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_40_21
CSP1_5_NC10, NC10, Bacteria

Not on your lists

21443..23134
DNA (1692bp) protein (564aa)
diguanylate cyclase bin=bin3_NC10 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
diguanylate cyclase
Tax=CSP1_5_NC10
PLM2_5_b1_sep16_scaffold_40_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23205..23759
DNA (555bp) protein (185aa)
Methylthioribulose-1-phosphate dehydratase Tax=Blastopirellula marina DSM 3645 RepID=A3ZQM9_9PLAN
methylthioribulose-1-phosphate dehydratase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM2_5_b1_sep16_scaffold_40_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23747..24310
DNA (564bp) protein (188aa)
Acireductone dioxygenase Tax=Leptolyngbya sp. PCC 6406 RepID=L8LFR6_9CYAN
Acireductone dioxygenase ARD
Tax=RBG_16_Acidobacteria_70_10_curated
PLM2_5_b1_sep16_scaffold_40_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

24322..24996
DNA (675bp) protein (225aa)
Enolase-phosphatase E1 Tax=Synechococcus elongatus RepID=MTNC_SYNE7
enolase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM2_5_b1_sep16_scaffold_40_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24993..26990)
DNA (1998bp) protein (666aa)
L-sorbosone dehydrogenase bin=GWC2_Methylomirabilis_70_24 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glucose sorbosone dehydrogenase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_40_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(27099..29243)
DNA (2145bp) protein (715aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E11BC
peptidase S45, penicillin amidase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_40_27
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(29240..31045)
DNA (1806bp) protein (602aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAT5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39341.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM2_5_b1_sep16_scaffold_40_28
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31161..33143
DNA (1983bp) protein (661aa)
Uncharacterized protein Tax=Fulvivirga imtechensis AK7 RepID=L8JJ95_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68870.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
PLM2_5_b1_sep16_scaffold_40_29
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33140..34042)
DNA (903bp) protein (301aa)
LysR family regulatory helix-turn-helix protein 193 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SXZ9_ALCXX
Putative LysR-family transcriptional regulator {ECO:0000313|EMBL:EYF05175.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
LysR family transcriptional regulator
PLM2_5_b1_sep16_scaffold_40_30

Not on your lists

34108..34800
DNA (693bp) protein (231aa)
Excisionase/Xis, DNA-binding Tax=delta proteobacterium MLMS-1 RepID=Q1NUW0_9DELT
Transcriptional repressor of DCM dehalogenase {ECO:0000313|EMBL:AHN97947.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
excisionase family DNA binding domain-containing protein
Displaying items 1-30 of 126 in total

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