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PLM2_5_b1_sep16_scaffold_166

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_166_1
unknown

Not on your lists

comp(3..380)
DNA (378bp) protein (126aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_2
unknown

Not on your lists

comp(401..985)
DNA (585bp) protein (195aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_3
unknown

Not on your lists

comp(993..1460)
DNA (468bp) protein (156aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_4
unknown

Not on your lists

comp(1485..2105)
DNA (621bp) protein (207aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2283..3626)
DNA (1344bp) protein (448aa)
Two-component, sigma54 specific, transcriptional regulator, Fis family Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8F917_DESAA
sigma-54 factor interaction domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_166_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3876..4889
DNA (1014bp) protein (338aa)
Family 2 glycosyl transferase Tax=Streptomyces auratus AGR0001 RepID=J2K796_9ACTO bin=16ft_combo_ws3_JS1 species=Streptomyces auratus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Glycosyltransferase like family 2
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM2_5_b1_sep16_scaffold_166_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

4892..6178
DNA (1287bp) protein (429aa)
alias=16ft_combo_ws3_scaffold_3415_20 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM2_5_b1_sep16_scaffold_166_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6183..8657)
DNA (2475bp) protein (825aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A719_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88939.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_166_9
unknown

Not on your lists

comp(8740..10245)
DNA (1506bp) protein (502aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10327..11931)
DNA (1605bp) protein (535aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A762_GEMAT
metal dependent phosphohydrolase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_166_11
unknown

Not on your lists

comp(11939..12460)
DNA (522bp) protein (174aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

12610..14430
DNA (1821bp) protein (607aa)
Hydrolase CocE/NonD family protein bin=GWA2_Ignavibacteria_55_11 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM2_5_b1_sep16_scaffold_166_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14433..14705)
DNA (273bp) protein (91aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000360F29E
Cupin 2 conserved barrel domain protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_166_14
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(14795..15841)
DNA (1047bp) protein (349aa)
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase bin=bin1_lowGC species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
methionine-R-sulfoxide reductase
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
PLM2_5_b1_sep16_scaffold_166_15
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15897..17243
DNA (1347bp) protein (449aa)
Uncharacterized protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R8A2_PIRSD
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_166_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17257..18981
DNA (1725bp) protein (575aa)
UPI0003CF8476 related cluster Tax=unknown RepID=UPI0003CF8476
PQQ-dependent dehydrogenase, methanol/ethanol family
PQQ-dependent dehydrogenase, methanol/ethanol family {ECO:0000313|EMBL:AHG91607.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_166_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18963..19388
DNA (426bp) protein (142aa)
hypothetical protein Tax=Rhizobium loti RepID=UPI00035E6308
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AHG91609.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_166_18
GWC2_Elusimicrobia_64_44_curated, Elusimicrobia, Bacteria

Not on your lists

comp(19390..19962)
DNA (573bp) protein (191aa)
Putative uncharacterized protein bin=GWC2_Elusimicrobia_64_44 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
hypothetical protein
Tax=GWC2_Elusimicrobia_64_44_curated
PLM2_5_b1_sep16_scaffold_166_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19966..21069)
DNA (1104bp) protein (368aa)
Uncharacterized protein Tax=Brassica rapa subsp. pekinensis RepID=M4E9W2_BRARP
putative atp/GTP-binding gly/ala-rich protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_166_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

21189..23609
DNA (2421bp) protein (807aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS sensor protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM2_5_b1_sep16_scaffold_166_21

Not on your lists

comp(23599..24585)
DNA (987bp) protein (329aa)
Aldo/keto reductase Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HT42_CYAP4
Uncharacterized protein {ECO:0000313|EMBL:KKN72753.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
aldo/keto reductase
PLM2_5_b1_sep16_scaffold_166_22
unknown

Not on your lists

comp(24640..24915)
DNA (276bp) protein (92aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25044..25556)
DNA (513bp) protein (171aa)
Putative uncharacterized protein Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC68_9ZZZZ
Protein of unknown function DUF2911
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_166_24
unknown

Not on your lists

comp(25553..25756)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_25
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

Not on your lists

25901..26524
DNA (624bp) protein (208aa)
Tax=RBG_13_Aminicenantes_64_14_curated
PLM2_5_b1_sep16_scaffold_166_26
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(26526..27386)
DNA (861bp) protein (287aa)
Putative hydrolase (Metallo-beta-lactamase superfamily) Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN56_SINAD
hydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM2_5_b1_sep16_scaffold_166_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27397..28401
DNA (1005bp) protein (335aa)
Beta-lactamase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJA7_KORVE
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AHG93328.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_166_28
unknown

Not on your lists

28435..28983
DNA (549bp) protein (183aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_166_29
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29051..30454
DNA (1404bp) protein (468aa)
Ig domain protein group 1 domain protein Tax=Geobacter sp. (strain M18) RepID=E8WQK8_GEOS8
Ig domain-containing protein
Ig domain protein group 1 domain protein {ECO:0000313|EMBL:ADW14002.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM2_5_b1_sep16_scaffold_166_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(30414..30917)
DNA (504bp) protein (168aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6T8_GEMAT
protein of unknown function DUF456
Uncharacterized protein {ECO:0000313|EMBL:AHG92231.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 34 in total

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