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PLM2_5_b1_sep16_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 266 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_3_1
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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2..589
DNA (588bp) protein (196aa)
Enoyl-CoA hydratase/isomerase family protein Tax=Patulibacter medicamentivorans RepID=H0DZY4_9ACTN
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EHN13088.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
enoyl-CoA hydratase/isomerase
PLM2_5_b1_sep16_scaffold_3_2
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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603..1055
DNA (453bp) protein (151aa)
Thioesterase superfamily protein 10 Tax=Mycobacterium abscessus 3A-0119-R RepID=I9FYL6_MYCAB
competence protein ComA
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
PLM2_5_b1_sep16_scaffold_3_3
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

1075..1668
DNA (594bp) protein (198aa)
Uncharacterized protein Tax=Patulibacter medicamentivorans RepID=H0E5C5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN11120.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
PLM2_5_b1_sep16_scaffold_3_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(1714..4134)
DNA (2421bp) protein (807aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F174_CONWI
P-type HAD superfamily ATPase
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:ADB50150.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_5
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4164..5225
DNA (1062bp) protein (354aa)
putative F420-dependent oxidoreductase (EC:1.5.99.11)
hypothetical protein Tax=Smaragdicoccus niigatensis RepID=UPI0003797326
Putative ATP/GTP-binding protein {ECO:0000313|EMBL:EMD23769.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
PLM2_5_b1_sep16_scaffold_3_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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5258..6376
DNA (1119bp) protein (373aa)
NAD(P) transhydrogenase alpha subunit {ECO:0000313|EMBL:EHN09784.1}; EC=1.6.1.2 {ECO:0000313|EMBL:EHN09784.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
NAD(P) transhydrogenase subunit alpha Tax=Patulibacter americanus RepID=UPI0003B537C7
alanine dehydrogenase/pyridine nucleotide transhydrogenase
PLM2_5_b1_sep16_scaffold_3_7
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6373..6687
DNA (315bp) protein (105aa)
NAD(P) transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein {ECO:0000313|EMBL:EHR60096.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
nicotinamide nucleotide transhydrogenase subunit alpha 2 PntAB
PLM2_5_b1_sep16_scaffold_3_8
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6684..8099
DNA (1416bp) protein (472aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
NAD(P) transhydrogenase subunit beta Tax=Saccharomonospora marina XMU15 RepID=H5X0G4_9PSEU
pntB; NAD(P) transhydrogenase subunit beta
PLM2_5_b1_sep16_scaffold_3_9
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

8199..9152
DNA (954bp) protein (318aa)
Uncharacterized protein Tax=Patulibacter medicamentivorans RepID=H0EBU4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN08846.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_3_10
unknown

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9139..10143
DNA (1005bp) protein (335aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_3_11

Not on your lists

comp(10148..10918)
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase SDR Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA15_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKL04324.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase/reductase SDR
PLM2_5_b1_sep16_scaffold_3_12
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10992..12116
DNA (1125bp) protein (375aa)
sulfatase modifying factor Tax=Salinispora arenicola RepID=UPI00035E0A87
Uncharacterized protein {ECO:0000313|EMBL:EME61906.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_3_13
Streptomyces sp. NRRL S-495, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12113..13102
DNA (990bp) protein (330aa)
methyltransferase Tax=Streptomyces RepID=UPI0002000B38
Histidyl-tRNA synthetase {ECO:0000313|EMBL:KJY35554.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-495.;"
methyltransferase
PLM2_5_b1_sep16_scaffold_3_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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13148..14428
DNA (1281bp) protein (427aa)
HipA domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026L8_SOLUE
HipA domain-containing protein
HipA domain protein {ECO:0000313|EMBL:ABJ83051.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM2_5_b1_sep16_scaffold_3_15
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14435..15364)
DNA (930bp) protein (310aa)
Luciferase Tax=Actinomadura madurae LIID-AJ290 RepID=U2MV55_9ACTO
luciferase-like monooxygenase
Luciferase-like monooxygenase {ECO:0000313|EMBL:ACY99506.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM2_5_b1_sep16_scaffold_3_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

15459..16475
DNA (1017bp) protein (339aa)
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA06_CONWI
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_17
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16564..17409
DNA (846bp) protein (282aa)
Uncharacterized protein Tax=Streptomyces sp. HGB0020 RepID=S2Z446_9ACTO
N5,N10-methylene tetrahydromethanopterin reductase {ECO:0000313|EMBL:KKD08742.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
PLM2_5_b1_sep16_scaffold_3_18
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

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comp(17423..17857)
DNA (435bp) protein (145aa)
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM2_5_b1_sep16_scaffold_3_19
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17908..18495
DNA (588bp) protein (196aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MNK1_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE06107.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM2_5_b1_sep16_scaffold_3_20
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18593..19114
DNA (522bp) protein (174aa)
Putative uncharacterized protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q4E0_CATAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU70000.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM2_5_b1_sep16_scaffold_3_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

19202..20200
DNA (999bp) protein (333aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Probable dual-specificity RNA methyltransferase RlmN Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1J9_CONWI
radical SAM enzyme, Cfr family
PLM2_5_b1_sep16_scaffold_3_22
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

20210..21643
DNA (1434bp) protein (478aa)
Cytochrome P450 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAL0_CONWI
cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:ADB49279.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_23
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(21668..23815)
DNA (2148bp) protein (716aa)
Glutamine synthetase type III GlnN {ECO:0000313|EMBL:EHN10359.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EHN10359.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
Glutamine synthetase type III GlnN Tax=Patulibacter medicamentivorans RepID=H0E7I8_9ACTN
glutamine synthetase
PLM2_5_b1_sep16_scaffold_3_24
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(24033..24548)
DNA (516bp) protein (172aa)
Peptidoglycan-binding domain 1 protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA19_CONWI
peptidoglycan-binding protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ADB53114.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_25
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

24702..26702
DNA (2001bp) protein (667aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EHN11494.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EHN11494.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
Enoyl-CoA hydratase Tax=Patulibacter medicamentivorans RepID=H0E499_9ACTN
enoyl-CoA hydratase/isomerase
PLM2_5_b1_sep16_scaffold_3_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

26729..27493
DNA (765bp) protein (255aa)
Silent information regulator protein Sir2 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F115_CONWI
silent information regulator protein Sir2
Silent information regulator protein Sir2 {ECO:0000313|EMBL:ADB50091.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_27
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

27496..28170
DNA (675bp) protein (225aa)
enolase-phosphatase E1 (EC:3.1.3.77)
Uncharacterized protein Tax=Patulibacter medicamentivorans RepID=H0E0T0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN12694.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
PLM2_5_b1_sep16_scaffold_3_28
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(28282..29139)
DNA (858bp) protein (286aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F116_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50092.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_29
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(29207..31516)
DNA (2310bp) protein (770aa)
Lytic transglycosylase catalytic Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F117_CONWI
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADB50093.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_3_30
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

31769..32122
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F118_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50094.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying items 1-30 of 266 in total

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