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PLM2_5_b1_sep16_scaffold_1756

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_1756_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1..165
DNA (165bp) protein (55aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y536_THEBD
PLM2_5_b1_sep16_scaffold_1756_2
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(513..1751)
DNA (1239bp) protein (413aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Niabella soli DSM 19437 RepID=H1NSS9_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII53745.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
PLM2_5_b1_sep16_scaffold_1756_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1891..2106
DNA (216bp) protein (72aa)
Translation initiation factor IF-1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F619_ACIC5
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
infA; translation initiation factor IF-1
PLM2_5_b1_sep16_scaffold_1756_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2299..2628
DNA (330bp) protein (110aa)
30S ribosomal protein S13 Tax=Solibacter usitatus (strain Ellin6076) RepID=RS13_SOLUE
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsM; 30S ribosomal protein S13
PLM2_5_b1_sep16_scaffold_1756_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2716..3117
DNA (402bp) protein (134aa)
30S ribosomal protein S11 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367E825
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsK; 30S ribosomal protein S11
PLM2_5_b1_sep16_scaffold_1756_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3328..3960
DNA (633bp) protein (211aa)
30S ribosomal protein S4 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7J1_TERSS
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
30S ribosomal protein S4
PLM2_5_b1_sep16_scaffold_1756_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4084..5067
DNA (984bp) protein (328aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZKY8_TERRK
PLM2_5_b1_sep16_scaffold_1756_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


5175..5651
DNA (477bp) protein (159aa)
50S ribosomal protein L17 Tax=Caldibacillus debilis RepID=UPI0003761137
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplQ; 50S ribosomal protein L17
PLM2_5_b1_sep16_scaffold_1756_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5674..6228
DNA (555bp) protein (185aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WXH6_ALIAD
Biotin carboxyl carrier protein {ECO:0000313|EMBL:CDM66142.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein
PLM2_5_b1_sep16_scaffold_1756_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6333..7676
DNA (1344bp) protein (448aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDM66143.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDM66143.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CDM66143.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Acetyl-CoA carboxylase, biotin carboxylase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MQ34_CORCM
accC2; acetyl-CoA carboxylase, biotin carboxylase
PLM2_5_b1_sep16_scaffold_1756_11

Not on your lists


7828..8097
DNA (270bp) protein (90aa)
30S ribosomal protein S15 Tax=uncultured soil bacterium RepID=L0MLK1_9BACT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; species="Bacteria; environmental samples.;" source="uncultured soil bacterium.;"
30S ribosomal protein S15
PLM2_5_b1_sep16_scaffold_1756_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8335..10470
DNA (2136bp) protein (712aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGD4_CHLTF
PLM2_5_b1_sep16_scaffold_1756_13
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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10794..11876
DNA (1083bp) protein (361aa)
Family 18 chitinase Tax=Chitiniphilus shinanonensis RepID=F8WSP9_9NEIS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI62864.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
PLM2_5_b1_sep16_scaffold_1756_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12007..12933
DNA (927bp) protein (309aa)
PEGA domain-containing protein {ECO:0000313|EMBL:CDM65708.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM2_5_b1_sep16_scaffold_1756_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


13089..14480
DNA (1392bp) protein (464aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG07_CHLTF
PLM2_5_b1_sep16_scaffold_1756_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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14480..15886
DNA (1407bp) protein (469aa)
tRNA nucleotidyltransferase/poly(A) polymerase {ECO:0000313|EMBL:CDM64567.1}; EC=2.7.7.72 {ECO:0000313|EMBL:CDM64567.1};; EC=3.1.3.- {ECO:0000313|EMBL:CDM64567.1};; EC=3.1.4.- {ECO:0000313|EMBL:CDM64567.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
polynucleotide adenylyltransferase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] bin=CNBR_ACIDO species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polynucleotide adenylyltransferase
PLM2_5_b1_sep16_scaffold_1756_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(16128..17501)
DNA (1374bp) protein (458aa)
RNA polymerase sigma factor SigA Tax=Acidobacterium capsulatum RepID=C1F1D9_ACIC5
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpoD; RNA polymerase sigma factor rpoD
PLM2_5_b1_sep16_scaffold_1756_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(17622..18920)
DNA (1299bp) protein (433aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA primase catalytic subunit (EC:2.7.7.-)
DNA primase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR3_CHLTF
Displaying 18 items

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