ggKbase home page

PLM2_5_b1_sep16_scaffold_954

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_954_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..562)
DNA (561bp) protein (187aa)
hypothetical protein Tax=Synechococcus sp. PCC 7336 RepID=UPI000347302F
Uncharacterized protein {ECO:0000313|EMBL:GAO38182.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_954_2
unknown

Not on your lists

comp(609..995)
DNA (387bp) protein (129aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_954_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1273..3333
DNA (2061bp) protein (687aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000382E893
transcriptional regulator domain-containing protein
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:AHG93530.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_954_4
unknown

Not on your lists

3440..3712
DNA (273bp) protein (91aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_954_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3758..4402
DNA (645bp) protein (215aa)
hypothetical protein Tax=Nafulsella turpanensis RepID=UPI00037FC4AB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93521.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_954_6

Not on your lists

comp(4399..5460)
DNA (1062bp) protein (354aa)
NAD-specific glutamate dehydrogenase Tax=mine drainage metagenome RepID=T1BJB3_9ZZZZ
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:EQD53339.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glu/Leu/Phe/Val dehydrogenase
PLM2_5_b1_sep16_scaffold_954_7
Eikenella corrodens, Eikenella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5412..5642)
DNA (231bp) protein (77aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Kingella denitrificans ATCC 33394 RepID=F0EXZ8_9NEIS
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Eikenella.;" source="Eikenella corrodens CC92I.;"
PLM2_5_b1_sep16_scaffold_954_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5826..6173
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Cyanothece RepID=C7QPS4_CYAP0
hypothetical protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM2_5_b1_sep16_scaffold_954_9
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6134..6493
DNA (360bp) protein (120aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI0003076DBF
probable conserved integral membrane protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM2_5_b1_sep16_scaffold_954_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6615..7151
DNA (537bp) protein (179aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:CDM64300.1}; EC=2.7.6.3 {ECO:0000313|EMBL:CDM64300.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B4B2CB
PLM2_5_b1_sep16_scaffold_954_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7190..8050
DNA (861bp) protein (287aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase Tax=Koribacter versatilis (strain Ellin345) RepID=PANB_KORVE
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
PLM2_5_b1_sep16_scaffold_954_12
unknown

Not on your lists

8073..8351
DNA (279bp) protein (93aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_954_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8380..9234
DNA (855bp) protein (285aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Pantothenate synthetase Tax=Desulfotomaculum RepID=F6B539_DESCC
pantothenate synthetase
PLM2_5_b1_sep16_scaffold_954_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9333..9809
DNA (477bp) protein (159aa)
Peroxiredoxin {ECO:0000313|EMBL:CDM65140.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
PLM2_5_b1_sep16_scaffold_954_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9874..10461)
DNA (588bp) protein (196aa)
Maf-like protein Acid_1082 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A46_SOLUE
Maf-like protein PYK22_01676 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
maf protein
PLM2_5_b1_sep16_scaffold_954_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10589..10975
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM65672.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM2_5_b1_sep16_scaffold_954_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10990..11271
DNA (282bp) protein (94aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
PLM2_5_b1_sep16_scaffold_954_18
unknown

Not on your lists

11273..11713
DNA (441bp) protein (147aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_954_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11716..13113
DNA (1398bp) protein (466aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120, ECO:0000256|SAAS:SAAS00013872};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWA2_Ignavibacteria_55_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
glutamyl-tRNA(Gln) amidotransferase subunit A
PLM2_5_b1_sep16_scaffold_954_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13120..15342)
DNA (2223bp) protein (741aa)
hypothetical protein Tax=Leptolyngbya boryana RepID=UPI0003725969
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:CDM66668.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
PLM2_5_b1_sep16_scaffold_954_21
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(15941..18067)
DNA (2127bp) protein (709aa)
oligopeptidase B (EC:3.4.21.83)
Oligopeptidase B, Serine peptidase, MEROPS family S09A {ECO:0000313|EMBL:AEP11413.1}; EC=3.4.21.83 {ECO:0000313|EMBL:AEP11413.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Oligopeptidase B, Serine peptidase, MEROPS family S09A Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFL2_CHLTF
PLM2_5_b1_sep16_scaffold_954_22
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18192..20108
DNA (1917bp) protein (639aa)
hypothetical protein Tax=Acidovorax radicis RepID=UPI00023758EF
Uncharacterized protein {ECO:0000313|EMBL:CDH43114.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_954_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(20183..21322)
DNA (1140bp) protein (380aa)
2-methylcitrate synthase/citrate synthase II (EC:2.3.3.1)
Citrate synthase Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WSL5_KYRT2
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM2_5_b1_sep16_scaffold_954_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(21478..22677)
DNA (1200bp) protein (400aa)
Putative peptidoglycan binding domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE68_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM65668.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_954_25

Not on your lists

comp(22900..25542)
DNA (2643bp) protein (881aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN57703.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
membrane associated hydrolase
PLM2_5_b1_sep16_scaffold_954_26
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(25677..27611)
DNA (1935bp) protein (645aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISW0_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40040.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM2_5_b1_sep16_scaffold_954_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(28371..29051)
DNA (681bp) protein (227aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025A1_SOLUE
YMGG-like Gly-zipper {ECO:0000313|EMBL:CDM66019.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
Displaying 27 items

View Taxonomy