ggKbase home page

PLM2_5_b1_sep16_scaffold_1260

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_1260_1
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25..1083
DNA (1059bp) protein (353aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000376F785
Helicase/secretion neighborhood CpaE-like protein {ECO:0000313|EMBL:EXG79288.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
septum formation initiator
PLM2_5_b1_sep16_scaffold_1260_2
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1080..2234
DNA (1155bp) protein (385aa)
Type II secretion system protein E Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S773_GEOOG
hypothetical protein
Type II secretion system protein E {ECO:0000313|EMBL:ADB73373.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM2_5_b1_sep16_scaffold_1260_3
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2231..2977
DNA (747bp) protein (249aa)
Putative Flp pilus assembly protein TadB Tax=Modestobacter marinus (strain BC501) RepID=I4ERX0_MODMB
flp pilus assembly protein TadB
Putative Flp pilus assembly protein TadB {ECO:0000313|EMBL:CCH86133.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1260_4
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2974..3666
DNA (693bp) protein (231aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI0003613905
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:ACZ00354.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM2_5_b1_sep16_scaffold_1260_5
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3862..4740
DNA (879bp) protein (293aa)
Inhibition of morphological differentiation protein Tax=Streptomyces sp. CNT372 RepID=UPI00036E2F2E
inhibition of morphological differentiation hydrolase
Inhibition of morphological differentiation hydrolase {ECO:0000313|EMBL:CCG01514.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM2_5_b1_sep16_scaffold_1260_6
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4995..5708)
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Modestobacter marinus (strain BC501) RepID=I4ERW6_MODMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH86129.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1260_7
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6015..7988
DNA (1974bp) protein (658aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
acetyl-CoA synthetase Tax=Actinopolymorpha alba RepID=UPI00037E4A21
acetyl-coenzyme A synthetase
PLM2_5_b1_sep16_scaffold_1260_8
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8249..9736
DNA (1488bp) protein (496aa)
Sodium/hydrogen exchanger Tax=Amycolatopsis mediterranei RepID=D8I7P6_AMYMU
Sodium:proton exchanger {ECO:0000313|EMBL:KHL04189.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
sodium/hydrogen exchanger
PLM2_5_b1_sep16_scaffold_1260_9
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9765..10175
DNA (411bp) protein (137aa)
Uncharacterized protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S690_GEOOG
Uncharacterized protein {ECO:0000313|EMBL:KJK12126.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1260_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10172..11098
DNA (927bp) protein (309aa)
hypothetical protein Tax=Longispora albida RepID=UPI0003647648
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EXG79281.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
PLM2_5_b1_sep16_scaffold_1260_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11303..12484)
DNA (1182bp) protein (394aa)
Trypsin-like serine protease with C-terminal PDZ domain Tax=Modestobacter marinus (strain BC501) RepID=I4ERP9_MODMB
Trypsin-like serine protease with C-terminal PDZ domain
Trypsin-like serine protease with C-terminal PDZ domain {ECO:0000313|EMBL:CCH86062.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1260_12
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12481..12900)
DNA (420bp) protein (140aa)
hypothetical protein Tax=Frankia sp. Iso899 RepID=UPI0003B3A7AE
blue (type 1) copper domain-containing protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ADB73304.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM2_5_b1_sep16_scaffold_1260_13
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12951..13751)
DNA (801bp) protein (267aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037CF035
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EXG79253.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
NUDIX hydrolase
PLM2_5_b1_sep16_scaffold_1260_14
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13744..14319)
DNA (576bp) protein (192aa)
Thiol-disulfide isomerase-like thioredoxin Tax=Modestobacter marinus (strain BC501) RepID=I4ERP6_MODMB
thiol-disulfide isomerase-like thioredoxin
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:CCH86059.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1260_15
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14316..15059)
DNA (744bp) protein (248aa)
nth; Endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000313|EMBL:CCH27630.1}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000313|EMBL:CCH27630.1};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
Endonuclease III Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JNR2_SACES
PLM2_5_b1_sep16_scaffold_1260_16
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15219..15482
DNA (264bp) protein (88aa)
Uncharacterized protein Tax=Frankia sp. QA3 RepID=I8QY90_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EIV95354.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1260_17
Tsukamurella paurometabola, Tsukamurella, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16327..16593
DNA (267bp) protein (89aa)
Crp/Fnr family transcriptional regulator Tax=Frankia sp. Iso899 RepID=UPI0003B7A37B
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ADG80504.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae; Tsukamurella.;" source="Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /; NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).;"
PLM2_5_b1_sep16_scaffold_1260_18
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16594..17406
DNA (813bp) protein (271aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI000379B5C6
Alpha/beta hydrolase {ECO:0000313|EMBL:KGH48222.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
PLM2_5_b1_sep16_scaffold_1260_19
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17382..18152)
DNA (771bp) protein (257aa)
Beta-lactamase domain protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WF85_ACTMD
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACU34217.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM2_5_b1_sep16_scaffold_1260_20
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18149..18991)
DNA (843bp) protein (281aa)
NUDIX hydrolase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B2L5_STRRD
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ACZ83492.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM2_5_b1_sep16_scaffold_1260_21
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19078..19518)
DNA (441bp) protein (147aa)
LysR family transcriptional regulator Tax=Rhodococcus opacus RepID=UPI00029CAE1B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHK28003.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
PLM2_5_b1_sep16_scaffold_1260_22
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19515..19670)
DNA (156bp) protein (52aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FHZ4_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB47687.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM2_5_b1_sep16_scaffold_1260_23
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19736..20638
DNA (903bp) protein (301aa)
Anion-transporting ATPase Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T0Q7_MICAI
ATPase {ECO:0000313|EMBL:EWM67052.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
anion-transporting ATPase
PLM2_5_b1_sep16_scaffold_1260_24
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20635..21783
DNA (1149bp) protein (383aa)
Oxyanion-translocating ATPase Tax=Frankia sp. QA3 RepID=I9KM15_9ACTO
Arsenite efflux ATP-binding protein ArsA {ECO:0000313|EMBL:KJE24413.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
anion-transporting ATPase
PLM2_5_b1_sep16_scaffold_1260_25
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21857..22150)
DNA (294bp) protein (98aa)
Transcriptional regulator WhiB Tax=Streptomyces zinciresistens K42 RepID=G2G6A5_9ACTO
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
PLM2_5_b1_sep16_scaffold_1260_26
unknown

Not on your lists

22389..22574
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying 26 items

View Taxonomy