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PLM2_5_b1_sep16_scaffold_1904

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_1904_1
unknown

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comp(2..190)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_1904_2
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(327..701)
DNA (375bp) protein (125aa)
50S ribosomal protein L20 Tax=Frankia sp. (strain EuI1c) RepID=E3JA58_FRASU
50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM2_5_b1_sep16_scaffold_1904_3
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(764..958)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 Tax=Corynebacterium nuruki RepID=UPI000248565C
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
rpmI; ribosomal protein L35
PLM2_5_b1_sep16_scaffold_1904_4
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1025..1546)
DNA (522bp) protein (174aa)
translation initiation factor IF-3 Tax=Frankia sp. Iso899 RepID=UPI0003B3785E
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea NA-128.;"
infC; translation initiation factor IF-3
PLM2_5_b1_sep16_scaffold_1904_5
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1789..2505)
DNA (717bp) protein (239aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F3N4_VERMA
Uncharacterized protein {ECO:0000313|EMBL:EXG81355.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1904_6
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(2548..3210)
DNA (663bp) protein (221aa)
Uncharacterized transcriptional regulatory protein yxjL Tax=Modestobacter marinus (strain BC501) RepID=I4EVI4_MODMB
yxjL; transcriptional regulator YxjL
Uncharacterized transcriptional regulatory protein yxjL {ECO:0000313|EMBL:CCH87397.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1904_7
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(3207..4358)
DNA (1152bp) protein (384aa)
Putative two-component system sensor kinase Tax=Modestobacter marinus (strain BC501) RepID=I4EVI5_MODMB
two-component system sensor kinase
Putative two-component system sensor kinase {ECO:0000313|EMBL:CCH87398.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1904_8
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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4451..5362
DNA (912bp) protein (304aa)
ABC transporter Tax=Modestobacter marinus (strain BC501) RepID=I4EVI6_MODMB
ABC transporter
ABC transporter {ECO:0000313|EMBL:CCH87399.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1904_9
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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5359..6255
DNA (897bp) protein (299aa)
Uncharacterized protein Tax=Modestobacter marinus (strain BC501) RepID=I4EVI7_MODMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH87400.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_1904_10
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(6195..7181)
DNA (987bp) protein (329aa)
hypothetical protein Tax=Saccharomonospora halophila RepID=UPI0003689A84
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL20955.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM2_5_b1_sep16_scaffold_1904_11
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7271..8146)
DNA (876bp) protein (292aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
ATP phosphoribosyltransferase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A813_THECD
PLM2_5_b1_sep16_scaffold_1904_12
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8174..8668)
DNA (495bp) protein (165aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase Tax=Actinomadura madurae LIID-AJ290 RepID=U2N285_9ACTO
PLM2_5_b1_sep16_scaffold_1904_13
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(8665..9894)
DNA (1230bp) protein (410aa)
Riboflavin biosynthesis protein RibBA Tax=Micromonospora RepID=D9T5V1_MICAI
3,4-dihydroxy-2-butanone 4-phosphate synthase
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM2_5_b1_sep16_scaffold_1904_14
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(9904..10476)
DNA (573bp) protein (191aa)
Riboflavin synthase (Alpha subunit) {ECO:0000313|EMBL:CCB78059.1}; EC=2.5.1.9 {ECO:0000313|EMBL:CCB78059.1};; Riboflavin synthase subunit alpha {ECO:0000313|EMBL:AEW97741.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
Riboflavin synthase (Alpha subunit) Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8K514_STREN
ribE; riboflavin synthase (alpha subunit)
PLM2_5_b1_sep16_scaffold_1904_15
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10477..11139)
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
ribulose-phosphate 3-epimerase Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEDD3
PLM2_5_b1_sep16_scaffold_1904_16
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(11149..12693)
DNA (1545bp) protein (515aa)
Fmu, rRNA SAM-dependent methyltransferase:Nop2p Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B6M0_STRRD
Fmu, rRNA SAM-dependent methyltransferase:Nop2p
Fmu, rRNA SAM-dependent methyltransferase:Nop2p {ECO:0000313|EMBL:ACZ85784.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM2_5_b1_sep16_scaffold_1904_17
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(12755..13624)
DNA (870bp) protein (290aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
methionyl-tRNA formyltransferase Tax=Streptomyces sp. BoleA5 RepID=UPI000365A8E4
methionyl-tRNA formyltransferase
PLM2_5_b1_sep16_scaffold_1904_18
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(13696..13929)
DNA (234bp) protein (78aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
Peptide deformylase Tax=Saccharopolyspora erythraea RepID=A4FBJ3_SACEN
Displaying 18 items

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