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PLM2_5_b1_sep16_scaffold_4844

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_4844_1
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..152)
DNA (150bp) protein (50aa)
RNA polymerase sigma factor SigL Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI000262901E
rpoE; RNA polymerase sigma-70 factor, ECF subfamily protein
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM2_5_b1_sep16_scaffold_4844_2
Streptomyces sp. NRRL S-495, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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234..713
DNA (480bp) protein (160aa)
Blue (Type 1) copper domain protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QET2_CATAD
Uncharacterized protein {ECO:0000313|EMBL:KJY36908.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-495.;"
blue (type 1) copper domain-containing protein
PLM2_5_b1_sep16_scaffold_4844_3
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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797..1582
DNA (786bp) protein (262aa)
Mycothiol-dependent maleylpyruvate isomerase Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JZ02_STREN
hypothetical protein
Mycothiol-dependent maleylpyruvate isomerase {ECO:0000313|EMBL:AEW93479.1}; Uncharacterized protein {ECO:0000313|EMBL:CCB73832.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM2_5_b1_sep16_scaffold_4844_4
Rhodococcus equi, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1675..2106)
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Corynebacterium equii RepID=E4WDA7_RHOE1
hypothetical protein
Histidine triad domain protein {ECO:0000313|EMBL:EGD24094.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus equi ATCC 33707.;"
PLM2_5_b1_sep16_scaffold_4844_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2221..2814
DNA (594bp) protein (198aa)
Cell division and transport-associated protein TolA Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZV3_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KJB95376.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TolA family protein
PLM2_5_b1_sep16_scaffold_4844_6
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2866..4158)
DNA (1293bp) protein (431aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
Signal transduction histidine kinase-like protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BDW1_STRRD
signal transduction histidine kinase-like protein
PLM2_5_b1_sep16_scaffold_4844_7
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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comp(4155..4847)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVB8_ACIC1
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABK53378.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM2_5_b1_sep16_scaffold_4844_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4955..5425
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZW6_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27792.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM2_5_b1_sep16_scaffold_4844_9
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(5435..6991)
DNA (1557bp) protein (519aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
NADH:ubiquinone oxidoreductase subunit N Tax=Frankia sp. Iso899 RepID=UPI0003B4355D
proton-translocating NADH-quinone oxidoreductase subunit N
PLM2_5_b1_sep16_scaffold_4844_10
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6988..8715)
DNA (1728bp) protein (576aa)
NADH dehydrogenase subunit M {ECO:0000313|EMBL:KDA44945.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KDA44945.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH dehydrogenase subunit M Tax=Frankia sp. (strain CcI3) RepID=Q2JFK8_FRASC
PLM2_5_b1_sep16_scaffold_4844_11
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8715..9623)
DNA (909bp) protein (303aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
NADH:ubiquinone oxidoreductase subunit L Tax=Frankia sp. Iso899 RepID=UPI0003B33EEC
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:EIV94170.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
PLM2_5_b1_sep16_scaffold_4844_12
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

9839..10300
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Bacteroides sp. CAG:144 RepID=R5Y885_9BACE
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM2_5_b1_sep16_scaffold_4844_13
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10666..10965)
DNA (300bp) protein (100aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
NADH-quinone oxidoreductase subunit K Tax=Saccharomonospora azurea RepID=H8GES1_9PSEU
NADH dehydrogenase subunit K
PLM2_5_b1_sep16_scaffold_4844_14
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10962..11771)
DNA (810bp) protein (270aa)
nuoJ; NADH dehydrogenase subunit J (EC:1.6.99.5)
NADH dehydrogenase subunit J {ECO:0000313|EMBL:CCH90341.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CCH90341.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
NADH dehydrogenase subunit J Tax=Modestobacter marinus (strain BC501) RepID=I4F3X8_MODMB
PLM2_5_b1_sep16_scaffold_4844_15
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(11768..12409)
DNA (642bp) protein (214aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
ferredoxin Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDCBF
nuoI; NADH dehydrogenase I subunit I
PLM2_5_b1_sep16_scaffold_4844_16
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(12409..13752)
DNA (1344bp) protein (448aa)
nuoH2; NADH-quinone oxidoreductase subunit H (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350, ECO:0000313|EMBL:CCG05251.1}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; EC=1.6.99.5 {ECO:0000313|EMBL:CCG05251.1};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
NADH-quinone oxidoreductase subunit H Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RPJ2_BLASD
PLM2_5_b1_sep16_scaffold_4844_17
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13749..16304)
DNA (2556bp) protein (852aa)
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH-quinone oxidoreductase chain G (NADH dehydrogenase I, chain G) (NDH-1, chain G) {ECO:0000313|EMBL:CAJ59703.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CAJ59703.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
NADH-quinone oxidoreductase chain G (NADH dehydrogenase I, chain G) (NDH-1, chain G) Tax=Frankia alni (strain ACN14a) RepID=Q0RRW2_FRAAA
PLM2_5_b1_sep16_scaffold_4844_18
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(16306..17598)
DNA (1293bp) protein (431aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:ADL43967.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ADL43967.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
NADH-quinone oxidoreductase, F subunit Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T6M1_MICAI
PLM2_5_b1_sep16_scaffold_4844_19
Eimeria mitis, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

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comp(17602..18024)
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Eimeria mitis RepID=U6KBI1_9EIME
Uncharacterized protein {ECO:0000313|EMBL:CDJ35355.1}; species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria mitis.;"
VanW family protein
Displaying 19 items

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