ggKbase home page

PLM2_5_b1_sep16_scaffold_2324

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_2324_1
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..658)
DNA (657bp) protein (219aa)
translation initiation factor IF-2 Tax=Frankia sp. Iso899 RepID=UPI0003B4A234
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM2_5_b1_sep16_scaffold_2324_2
Ictidomys tridecemlineatus, Ictidomys, Rodentia, Mammalia, Chordata, Metazoa

Not on your lists

1329..1655
DNA (327bp) protein (109aa)
PREDICTED: SKI family transcriptional corepressor 2 Tax=Spermophilus tridecemlineatus RepID=UPI00038BE9C5
Uncharacterized protein {ECO:0000313|Ensembl:ENSSTOP00000015967}; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Sciuridae; Xerinae; Marmotini; Ictidomys.;" source="Spermophilus tridecemlineatus (Thirteen-lined ground squirrel); (Ictidomys tridecemlineatus).;"
PLM2_5_b1_sep16_scaffold_2324_3
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2410..3522)
DNA (1113bp) protein (371aa)
Transcription elongation factor NusA Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FBP1_VERMA
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
PLM2_5_b1_sep16_scaffold_2324_4
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3519..4037)
DNA (519bp) protein (173aa)
Ribosome maturation factor RimP Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SDW9_GEOOG
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM2_5_b1_sep16_scaffold_2324_5
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4171..4743
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2R6L4_STRVP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA58643.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 /; JCM 4526 / NBRC 13096 / PD 04745).;"
PLM2_5_b1_sep16_scaffold_2324_6
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4740..5237
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8S9T8_MICSL
hypothetical protein
Conserved hypothetical alanine-rich protein {ECO:0000313|EMBL:EWM65364.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
PLM2_5_b1_sep16_scaffold_2324_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5528..6400
DNA (873bp) protein (291aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8H6_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50940.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_2324_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

6397..7074
DNA (678bp) protein (226aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F7D0_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB48901.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_2324_9
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7071..7763)
DNA (693bp) protein (231aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037B2162
haloacid dehalogenase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:AIY19860.2}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
PLM2_5_b1_sep16_scaffold_2324_10
Streptomyces sp. MUSC164, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(7745..9475)
DNA (1731bp) protein (577aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC164.;"
prolyl-tRNA synthetase Tax=Streptomyces rapamycinicus RepID=UPI0003830FA7
prolyl-tRNA synthetase
PLM2_5_b1_sep16_scaffold_2324_11
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9510..10352
DNA (843bp) protein (281aa)
GCN5-related N-acetyltransferase Tax=Frankia sp. (strain EAN1pec) RepID=A8L6E3_FRASN
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABW10625.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM2_5_b1_sep16_scaffold_2324_12
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10395..12257
DNA (1863bp) protein (621aa)
Penicillin-binding protein transpeptidase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SDX2_GEOOG
penicillin-binding protein transpeptidase
Penicillin-binding protein transpeptidase {ECO:0000313|EMBL:ADB76538.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM2_5_b1_sep16_scaffold_2324_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12264..12863)
DNA (600bp) protein (200aa)
zinc metalloprotease Tax=Salinispora pacifica RepID=UPI00035E6BE9
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65581.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
peptidase M50
Displaying 13 items

View Taxonomy