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PLM2_5_b1_sep16_scaffold_9355_8

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: 6121..6909

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily Tax=Frankia sp. (strain EuI1c) RepID=E3IV06_FRASU similarity UNIREF
DB: UNIREF100
  • Identity: 59.5
  • Coverage: 269.0
  • Bit_score: 289
  • Evalue 2.10e-75
sigma-B/F/G subfamily RNA polymerase sigma-28 factor similarity KEGG
DB: KEGG
  • Identity: 59.5
  • Coverage: 269.0
  • Bit_score: 289
  • Evalue 5.90e-76
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG {ECO:0000313|EMBL:KJE22944.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.7
  • Coverage: 271.0
  • Bit_score: 289
  • Evalue 2.90e-75

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Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 789
GTGACCGCTGTCGCCCTCGACCCGGCCGGGAGCCGCGGACCGACCCGCGAGCCGGCGAAGGAGTCCGCCCGGCGGCTGTTCCGGCGGCTGGCCGAGCTGCCCGACTGCCCCGAGCGGGACCGCATCCGGACCAGCCTGGTCGAGCGGCACCTGCCGCTGGTCCGCCACTTCGCCCGCCGGTACGCCGGGCGCGGCGAGCCGCTGGACGACCTGCTGCAGGCCGGCTCGGTCGGGCTGGTCAAGGCGGTCGACCGGTTCGACCCGGCCCGCGGGCTGGAGTTCAGCACGTACGCGGCGCCGACGATCCTGGGCGAGATCCGCCGCCACTTCCGGGACCGCACCTGGGCGGTGCACGTGCACCGCCACCTGCAGGAGGTGACCATGGAGGTCACCCGCCTGGTGGAGGCGCTGACGCACGAGCTCAACCGTTCGCCGAGCGTGGCCGAGCTGGCCGCGCGGGCCGGGCGCACGGAGGAGGAGGTGCTGGAGGCGCTGGAGTGCGCCGCCGCGTACACCGCCGACTCGCTGGACGCGCCGACGGACGAGGACCGGGCGCTCGGCGACCGGCTCGGCGGCGAGGACCCGGCACTGGCCGGCGTCGAGCTGCACGAGTCGCTCGGGCCGGCGCTGGCGACGCTGCCGGAGCGCGAGCGGCGGATCCTGCAGCTGCGCTTCTACGGCAACCAGACGCAGTCGCAGATCGCGGCCCAGCTCGGCATCTCGCAGATGCACGTGTCCCGGCTGCTGGCCCGCACCCTCGCCCAGCTCCGGGAGCAGCTGCTGGCCTGA
PROTEIN sequence
Length: 263
VTAVALDPAGSRGPTREPAKESARRLFRRLAELPDCPERDRIRTSLVERHLPLVRHFARRYAGRGEPLDDLLQAGSVGLVKAVDRFDPARGLEFSTYAAPTILGEIRRHFRDRTWAVHVHRHLQEVTMEVTRLVEALTHELNRSPSVAELAARAGRTEEEVLEALECAAAYTADSLDAPTDEDRALGDRLGGEDPALAGVELHESLGPALATLPERERRILQLRFYGNQTQSQIAAQLGISQMHVSRLLARTLAQLREQLLA*