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PLM2_5_b1_sep16_scaffold_633

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_633_1
unknown

Not on your lists

145..396
DNA (252bp) protein (84aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_633_2
unknown

Not on your lists

1051..1260
DNA (210bp) protein (70aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_633_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1199..2824
DNA (1626bp) protein (542aa)
Recombinase Tax=Methylosinus trichosporium OB3b RepID=D5QPN1_METTR
resolvase domain-containing protein
Resolvase domain protein {ECO:0000313|EMBL:ABS14279.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
PLM2_5_b1_sep16_scaffold_633_trna_2
unknown

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comp(2763..2835)
DNA (73bp)
transferRNA Phe
PLM2_5_b1_sep16_scaffold_633_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3002..3196)
DNA (195bp) protein (65aa)
DNA gyrase inhibitor YacG Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Y50_RHOPB
zinc-binding protein
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM2_5_b1_sep16_scaffold_633_5
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3186..3809)
DNA (624bp) protein (208aa)
Maf-like protein maf Tax=Bradyrhizobium RepID=I0GG26_9BRAD
maf; Maf-like protein
Maf-like protein BCCGELA001_07132 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
PLM2_5_b1_sep16_scaffold_633_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4110..4577)
DNA (468bp) protein (156aa)
Putative arsenate reductase (ArsC-like) Tax=Bradyrhizobium sp. ORS 285 RepID=H0S0I7_9BRAD
ArsC family transcriptional regulator {ECO:0000313|EMBL:KJC58007.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
arsenate reductase
PLM2_5_b1_sep16_scaffold_633_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4719..5222)
DNA (504bp) protein (168aa)
UPF0262 protein S23_65350 Tax=Bradyrhizobium sp. S23321 RepID=I0GG28_9BRAD
UPF0262 protein UP09_35110 {ECO:0000256|HAMAP-Rule:MF_00678}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_633_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5219..6514)
DNA (1296bp) protein (432aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRG3_NITHX
PLM2_5_b1_sep16_scaffold_633_9
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6737..7192)
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TDQ9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04597.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_633_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7303..8592)
DNA (1290bp) protein (430aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00111}; EC=2.5.1.7 {ECO:0000255|HAMAP-Rule:MF_00111};; Enoylpyruvate transferase {ECO:0000255|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000255|HAMAP-Rule:MF_00111}; Short=EPT {ECO:0000255|HAMAP-Rule:MF_00111};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=MURA_NITHX
PLM2_5_b1_sep16_scaffold_633_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8865..9074
DNA (210bp) protein (70aa)
transporter Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A0640
Transporter {ECO:0000313|EMBL:KIZ38979.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
TOBE domain-containing protein
PLM2_5_b1_sep16_scaffold_633_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9071..10093
DNA (1023bp) protein (341aa)
Periplasmic binding protein Tax=Hydrogenophaga sp. PBC RepID=I4MK45_9BURK
Periplasmic binding protein {ECO:0000313|EMBL:EIK89585.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
periplasmic binding protein
PLM2_5_b1_sep16_scaffold_633_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10107..11126
DNA (1020bp) protein (340aa)
Transport system permease protein Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJD7_METS4
transport system permease
Transport system permease protein {ECO:0000313|EMBL:ACA14987.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM2_5_b1_sep16_scaffold_633_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11123..11884
DNA (762bp) protein (254aa)
hypothetical protein Tax=Methylobacterium sp. WSM2598 RepID=UPI00037434A0
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:EIK89583.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter
PLM2_5_b1_sep16_scaffold_633_15
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11986..12666)
DNA (681bp) protein (227aa)
epimerase Tax=Afipia birgiae RepID=UPI000382D82C
Epimerase {ECO:0000313|EMBL:KJC58004.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_633_16
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12684..13508)
DNA (825bp) protein (275aa)
alpha/beta hydrolase Tax=Afipia birgiae RepID=UPI0002EF287F
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC58001.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Non-heme chloroperoxidase
PLM2_5_b1_sep16_scaffold_633_17
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13591..14103)
DNA (513bp) protein (171aa)
Uncharacterized protein Tax=Bradyrhizobium sp. YR681 RepID=J3I634_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN16088.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_633_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14250..15176)
DNA (927bp) protein (309aa)
Alpha/beta hydrolase fold Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07I22_RHOP5
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABJ08412.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
PLM2_5_b1_sep16_scaffold_633_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15208..15516)
DNA (309bp) protein (103aa)
Zn-finger-containing protein Tax=Bradyrhizobium elkanii RepID=UPI0002D50D17
Bradyrhizobium elkanii strain UASWS1015 Contig180, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47171.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_633_20
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15531..17246)
DNA (1716bp) protein (572aa)
thioredoxin reductase Tax=Bradyrhizobium japonicum RepID=UPI0003677980
Thioredoxin reductase {ECO:0000313|EMBL:EJZ34826.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
thioredoxin reductase
PLM2_5_b1_sep16_scaffold_633_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17352..17555)
DNA (204bp) protein (68aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI00037B04F5
Uncharacterized protein {ECO:0000313|EMBL:ERF83926.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
PLM2_5_b1_sep16_scaffold_633_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17614..18060
DNA (447bp) protein (149aa)
Putative uncharacterized protein Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Y41_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD89945.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM2_5_b1_sep16_scaffold_633_trna_1
unknown

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18171..18242
DNA (72bp)
transferRNA Thr
PLM2_5_b1_sep16_scaffold_633_23
unknown

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comp(18269..18460)
DNA (192bp) protein (64aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_633_24
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18952..19467)
DNA (516bp) protein (172aa)
DNA invertase Tax=Sphingobium ummariense RL-3 RepID=T0IUS6_9SPHN
DNA invertase {ECO:0000313|EMBL:EQB32585.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
resolvase domain-containing protein
PLM2_5_b1_sep16_scaffold_633_25
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19574..20584
DNA (1011bp) protein (337aa)
Endo-1,3-1,4-beta-glycanase Tax=Bradyrhizobium sp. S23321 RepID=I0GFS2_9BRAD
1,3-1,4-beta-glycanase {ECO:0000313|EMBL:KJC49778.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
endo-1,3-1,4-beta-glycanase
PLM2_5_b1_sep16_scaffold_633_26
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20610..21272
DNA (663bp) protein (221aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Beta-galactosidase Tax=Bradyrhizobium sp. YR681 RepID=J2VR00_9BRAD
beta-glucosidase
Displaying 28 items

View Taxonomy