ggKbase home page

PLM2_5_b1_sep16_scaffold_4136

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_4136_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..124)
DNA (123bp) protein (41aa)
Uncharacterized protein Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKW8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63129.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PLM2_5_b1_sep16_scaffold_4136_2
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282..734)
DNA (453bp) protein (151aa)
Putative DNA polymerase III, chi subunit, HolC {ECO:0000313|EMBL:CCD88095.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCD88095.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
DNA polymerase III subunit chi (EC:2.7.7.7)
Putative DNA polymerase III, chi subunit, HolC Tax=Bradyrhizobium sp. ORS 285 RepID=H0S1L8_9BRAD
PLM2_5_b1_sep16_scaffold_4136_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(746..2248)
DNA (1503bp) protein (501aa)
leucyl aminopeptidase (EC:3.4.11.1)
aminopeptidase A Tax=Bradyrhizobium elkanii RepID=UPI00036C5155
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
PLM2_5_b1_sep16_scaffold_4136_4
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2483..3772
DNA (1290bp) protein (430aa)
permease Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036FB9FE
Permease {ECO:0000313|EMBL:KJC55238.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
permease
PLM2_5_b1_sep16_scaffold_4136_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3769..4866
DNA (1098bp) protein (366aa)
permease Tax=Bradyrhizobium elkanii RepID=UPI00031A2DBC
Permease {ECO:0000313|EMBL:KJC50942.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
permease
PLM2_5_b1_sep16_scaffold_4136_6
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4866..7364
DNA (2499bp) protein (833aa)
Organic solvent tolerance protein OstA Tax=Bradyrhizobium sp. YR681 RepID=J3CZ21_9BRAD
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_4136_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7437..8384
DNA (948bp) protein (316aa)
Putative uncharacterized protein Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215S2_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87864.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM2_5_b1_sep16_scaffold_4136_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8384..9391
DNA (1008bp) protein (336aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
4-hydroxythreonine-4-phosphate dehydrogenase Tax=Bradyrhizobium elkanii RepID=UPI0003718A18
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase
PLM2_5_b1_sep16_scaffold_4136_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9388..10254
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
16S rRNA methyltransferase Tax=Bradyrhizobium elkanii RepID=UPI00037C6254
Displaying 9 items

View Taxonomy