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PLM2_5_b1_sep16_scaffold_296

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_296_1
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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3..584
DNA (582bp) protein (194aa)
RNA polymerase sigma factor SigA Tax=Patulibacter medicamentivorans RepID=H0E9P4_9ACTN
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
RpoD subfamily RNA polymerase sigma-70 subunit
PLM2_5_b1_sep16_scaffold_296_2
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

581..997
DNA (417bp) protein (139aa)
hypothetical protein Tax=Promicromonospora sukumoe RepID=UPI00037393B0
Putative uncharacterized protein {ECO:0000313|EMBL:EHR61690.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
glyoxalase/bleomycin resistance protein/dioxygenase
PLM2_5_b1_sep16_scaffold_296_3
unknown

Not on your lists

comp(981..3071)
DNA (2091bp) protein (697aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_296_4
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

3126..5258
DNA (2133bp) protein (711aa)
Sulfatase bin=GWA2_Elusimicrobia_69_24 species=Micromonospora lupini genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
sulfatase
Tax=GWA2_Elusimicrobia_69_24_curated
PLM2_5_b1_sep16_scaffold_296_5
unknown

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comp(5255..5428)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_296_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(5449..5940)
DNA (492bp) protein (164aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_296_7
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(5954..7222)
DNA (1269bp) protein (423aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KGQ21092.2}; EC=2.6.1.19 {ECO:0000313|EMBL:KGQ21092.2};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
gabT3; 4-aminobutyrate transaminase (EC:2.6.1.19)
4-aminobutyrate aminotransferase Tax=Thermus oshimai RepID=UPI00035D8920
PLM2_5_b1_sep16_scaffold_296_8
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7292..7948
DNA (657bp) protein (219aa)
anti-oxidant AhpCTSA family protein (EC:1.11.1.7)
Peroxiredoxin Tax=Frankia sp. QA3 RepID=I9A5U2_9ACTO
Peroxiredoxin {ECO:0000313|EMBL:EIV94831.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
PLM2_5_b1_sep16_scaffold_296_9
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7996..8433
DNA (438bp) protein (146aa)
Ion transport 2 domain protein Tax=Frankia sp. (strain EuI1c) RepID=E3J7L3_FRASU
Ion transport 2 domain-containing protein
Ion transport 2 domain protein {ECO:0000313|EMBL:ADP79622.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM2_5_b1_sep16_scaffold_296_10
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8538..10694
DNA (2157bp) protein (719aa)
membrane protein Tax=Patulibacter americanus RepID=UPI0003B6D2CD
MmpL domain-containing protein
MmpL domain-containing protein {ECO:0000313|EMBL:ADP80208.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM2_5_b1_sep16_scaffold_296_11

Not on your lists

comp(10707..13370)
DNA (2664bp) protein (888aa)
Uncharacterized protein (Fragment) Tax=Ficedula albicollis RepID=U3K3X9_FICAL
Uncharacterized protein {ECO:0000313|EMBL:KKK97573.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
lipoprotein
PLM2_5_b1_sep16_scaffold_296_12
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13492..13992)
DNA (501bp) protein (167aa)
hypothetical protein Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000370F952
MarR family transcriptional regulator {ECO:0000313|EMBL:KDN87364.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
MarR family transcriptional regulator
PLM2_5_b1_sep16_scaffold_296_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

14068..15540
DNA (1473bp) protein (491aa)
multidrug MFS transporter Tax=Patulibacter americanus RepID=UPI0003B5EA46
EmrB/QacA subfamily drug resistance transporter
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ADB53961.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_296_14
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15566..16303
DNA (738bp) protein (246aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0IA02_CALAS
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_296_15
unknown

Not on your lists

comp(16300..16968)
DNA (669bp) protein (223aa)
membrane protein
PLM2_5_b1_sep16_scaffold_296_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16971..18092)
DNA (1122bp) protein (374aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_296_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(18123..18401)
DNA (279bp) protein (93aa)
hypothetical protein Tax=Streptomyces sp. HmicA12 RepID=UPI0003644F80
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_296_18
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18411..18632)
DNA (222bp) protein (74aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI000380BBDF
Uncharacterized protein {ECO:0000313|EMBL:KHD97951.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_296_19
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18652..18924)
DNA (273bp) protein (91aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI000380BBDF
Uncharacterized protein {ECO:0000313|EMBL:KHD97951.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_296_20
unknown

Not on your lists

comp(18946..19425)
DNA (480bp) protein (160aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_296_21
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19541..21808)
DNA (2268bp) protein (756aa)
Transcriptional regulator Tax=Mycobacterium RepID=H8JH15_MYCIT
Uncharacterized protein {ECO:0000313|EMBL:KBZ64295.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis TKK-01-0051.;"
transcriptional regulator
PLM2_5_b1_sep16_scaffold_296_22
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(21805..22236)
DNA (432bp) protein (144aa)
Response regulator receiver protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZV2_CONWI
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADB49928.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_296_23
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22266..22931)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, LuxR family Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVH7_PSEUX
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEA23797.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM2_5_b1_sep16_scaffold_296_24
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(22928..24715)
DNA (1788bp) protein (596aa)
Integral membrane sensor signal transduction histidine kinase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1H2_CONWI
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ADB52135.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_296_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

25073..26482
DNA (1410bp) protein (470aa)
Integral membrane sensor signal transduction histidine kinase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRQ7_ROSCS
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM2_5_b1_sep16_scaffold_296_26
Saccharomonospora viridis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26472..27185
DNA (714bp) protein (238aa)
Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MRK0_SACVD
response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein
Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein {ECO:0000313|EMBL:ACU98786.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
PLM2_5_b1_sep16_scaffold_296_27
RHI_Saccharibacteria_49_19, Candidatus Saccharibacteria, Bacteria

Not on your lists

27322..27732
DNA (411bp) protein (137aa)
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI00034D1C82
Integral membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_49_19_curated
PLM2_5_b1_sep16_scaffold_296_28
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(27785..27964)
DNA (180bp) protein (60aa)
RDD domain containing protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZV1_CONWI
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:ADB49927.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying 28 items

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