ggKbase home page

PLM2_5_b1_sep16_scaffold_614

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_614_1
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..573
DNA (573bp) protein (191aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Ribosomal RNA small subunit methyltransferase G Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAH8_AMMDK
methyltransferase GidB
PLM2_5_b1_sep16_scaffold_614_2
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

587..1342
DNA (756bp) protein (252aa)
Cobyrinic acid ac-diamide synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3W8_CONWI
cobyrinic acid ac-diamide synthase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

1326..2168
DNA (843bp) protein (281aa)
ParB-like partition protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3W7_CONWI
parB-like partition protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_4
unknown

Not on your lists

2208..2456
DNA (249bp) protein (83aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_614_5

Not on your lists

2489..3367
DNA (879bp) protein (293aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A677_GEMAT
Marine sediment metagenome DNA, contig: S01H1_L05421 {ECO:0000313|EMBL:GAF80379.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_614_6
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4014..4436
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Streptomyces davawensis JCM 4913 RepID=K4QSK7_9ACTO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM2_5_b1_sep16_scaffold_614_trna_1
unknown

Not on your lists

comp(4469..4542)
DNA (74bp)
transferRNA Ile
PLM2_5_b1_sep16_scaffold_614_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

4854..5351
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3W6_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB54341.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_614_8
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5348..5632)
DNA (285bp) protein (95aa)
chorismate mutase (EC:5.4.99.5)
Chorismate mutase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY32_RUBXD
Tax=RBG_16_Actinobacteria_64_13_curated
PLM2_5_b1_sep16_scaffold_614_9
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5629..6123)
DNA (495bp) protein (165aa)
Putative uncharacterized protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z0R8_DESAT
Uncharacterized protein {ECO:0000313|EMBL:KFF03147.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_614_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(6089..7405)
DNA (1317bp) protein (439aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3R9_CONWI
ErfK/YbiS/YcfS/YnhG family protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM2_5_b1_sep16_scaffold_614_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(7455..8102)
DNA (648bp) protein (216aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI0003813D64
CAAX amino terminal protease family.
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(8099..8725)
DNA (627bp) protein (209aa)
Haloacid dehalogenase-like hydrolase domain containing 3 Tax=Patulibacter medicamentivorans RepID=H0E0I7_9ACTN
Haloacid dehalogenase-like hydrolase domain containing 3 {ECO:0000313|EMBL:EHN12806.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
HAD-superfamily hydrolase
PLM2_5_b1_sep16_scaffold_614_13
unknown

Not on your lists

comp(8712..9572)
DNA (861bp) protein (287aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_614_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9569..10819)
DNA (1251bp) protein (417aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3S2_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB54297.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_614_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10839..11246
DNA (408bp) protein (136aa)
hypothetical protein bin=bin3_NC10 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM2_5_b1_sep16_scaffold_614_16
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

11256..11978
DNA (723bp) protein (241aa)
MscS Mechanosensitive ion channel Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3S3_CONWI
mechanosensitive ion channel MscS
Tax=RBG_16_Actinobacteria_64_13_curated
PLM2_5_b1_sep16_scaffold_614_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

11975..14173
DNA (2199bp) protein (733aa)
Glycosyl transferase family 51 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3S4_CONWI
glycosyl transferase family protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

14176..15447
DNA (1272bp) protein (424aa)
Putative membrane protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX69_RUBXD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ABG04009.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM2_5_b1_sep16_scaffold_614_19
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15309..16754)
DNA (1446bp) protein (482aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HYS5_CALAS
putative membrane protein (DUF2079)
Putative membrane protein (DUF2079) {ECO:0000313|EMBL:AHY45827.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM2_5_b1_sep16_scaffold_614_20
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(16751..17824)
DNA (1074bp) protein (358aa)
Glycosyl transferase group 1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C219_SPHTD
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACZ38286.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM2_5_b1_sep16_scaffold_614_21
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(17860..18756)
DNA (897bp) protein (299aa)
Glycosyl transferase family 2 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C229_SPHTD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACZ38296.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM2_5_b1_sep16_scaffold_614_22
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

18841..20037
DNA (1197bp) protein (399aa)
Molybdenum cofactor synthesis domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA04_CONWI
molybdenum cofactor synthesis protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_23
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(20044..20778)
DNA (735bp) protein (245aa)
Putative sortase Tax=Patulibacter medicamentivorans RepID=H0E9M7_9ACTN
Putative sortase {ECO:0000313|EMBL:EHN09614.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
sortase family protein
PLM2_5_b1_sep16_scaffold_614_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(20775..22655)
DNA (1881bp) protein (627aa)
UPI0003D0A1F0 related cluster Tax=unknown RepID=UPI0003D0A1F0
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_25
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

22705..23400
DNA (696bp) protein (232aa)
Two component transcriptional regulator, winged helix family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3T0_CONWI
two component transcriptional regulator
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_614_26
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

23397..24545
DNA (1149bp) protein (383aa)
Integral membrane sensor signal transduction histidine kinase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3T1_CONWI
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying 27 items

View Taxonomy