ggKbase home page

PLM2_5_b1_sep16_scaffold_708

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_708_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

3..266
DNA (264bp) protein (88aa)
Transcriptional regulator, CarD family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F138_CONWI
BadM/Rrf2 family transcriptional regulator
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_2
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

273..944
DNA (672bp) protein (224aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
UPI0002E13976 related cluster Tax=unknown RepID=UPI0002E13976
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PLM2_5_b1_sep16_scaffold_708_3
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

941..1762
DNA (822bp) protein (274aa)
Histidinol phosphate phosphatase HisJ family Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SHC4_THEM7
HisJ family histidinol phosphate phosphatase
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:ADU50688.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM2_5_b1_sep16_scaffold_708_4
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

1759..2235
DNA (477bp) protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) RepID=C7ML51_CRYCD
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(2219..2935)
DNA (717bp) protein (239aa)
HhH-GPD family protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAY2_CONWI
HhH-GPD family protein
HhH-GPD family protein {ECO:0000313|EMBL:ADB51295.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_708_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

2964..3716
DNA (753bp) protein (251aa)
hypothetical protein Tax=Streptomyces sp. FxanaD5 RepID=UPI00036C06AA
carboxymethylenebutenolidase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_7
Austwickia chelonae, Austwickia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3713..4177
DNA (465bp) protein (155aa)
hypothetical protein Tax=Promicromonospora sukumoe RepID=UPI00037642CC
Uncharacterized protein {ECO:0000313|EMBL:GAB78705.1}; species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Austwickia.;" source="Austwickia chelonae NBRC 105200.;"
GCN5-related N-acetyltransferase
PLM2_5_b1_sep16_scaffold_708_8
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4174..4746)
DNA (573bp) protein (191aa)
XRE family transcriptional regulator Tax=Streptomyces viridosporus RepID=UPI0002FB2843
XRE family transcriptional regulator {ECO:0000313|EMBL:EWT04067.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
XRE family transcriptional regulator
PLM2_5_b1_sep16_scaffold_708_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

4797..6065
DNA (1269bp) protein (423aa)
hypothetical protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM2_5_b1_sep16_scaffold_708_10
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

6084..7064
DNA (981bp) protein (327aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI0003668DB4
glutamyl-tRNA synthetase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_11
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

7104..7523
DNA (420bp) protein (140aa)
Large conductance mechanosensitive channel protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QLV7_9CYAN
mscL; large conductance mechanosensitive channel protein
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM2_5_b1_sep16_scaffold_708_12
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

7539..8828
DNA (1290bp) protein (430aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F142_CONWI
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_708_13
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8825..9532
DNA (708bp) protein (236aa)
RNA methyltransferase, TrmH family, group 3 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F143_CONWI
TrmH family RNA methyltransferase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_708_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

9525..9965
DNA (441bp) protein (147aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

10073..10735
DNA (663bp) protein (221aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F144_CONWI
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_trna_1
unknown

Not on your lists

10758..10831
DNA (74bp)
transferRNA Thr
PLM2_5_b1_sep16_scaffold_708_16
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10902..11969
DNA (1068bp) protein (356aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00030EACF2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB76314.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM2_5_b1_sep16_scaffold_708_17
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(11976..13253)
DNA (1278bp) protein (426aa)
Glycosyltransferase, MGT family bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
MGT family glycosyltransferase
Tax=GWC2_RIF_CHLX_73_18_curated
PLM2_5_b1_sep16_scaffold_708_18
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(13250..14212)
DNA (963bp) protein (321aa)
cystathionine gamma-synthase Tax=Amycolatopsis methanolica RepID=UPI000371EC7C
metB; cystathionine gamma-synthase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_708_19
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

14310..15290
DNA (981bp) protein (327aa)
Sulfate ABC transporter, periplasmic sulfate-binding protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHK4_THET1
sulfate ABC transporter substrate-binding protein
Sulfate ABC transporter, periplasmic sulfate-binding protein {ECO:0000313|EMBL:ACZ43225.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM2_5_b1_sep16_scaffold_708_20
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

15280..16113
DNA (834bp) protein (278aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2NAR2_9ACTO
sulfate ABC transporter permease
Sulfate ABC transporter, inner membrane subunit CysT {ECO:0000313|EMBL:ACZ43226.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM2_5_b1_sep16_scaffold_708_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

16106..16894
DNA (789bp) protein (263aa)
Sulfate ABC transporter, inner membrane subunit Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC29_CONWI
sulfate ABC transporter permease
Sulfate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADB53324.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_708_22

Not on your lists

16894..17850
DNA (957bp) protein (319aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Sulfate and thiosulfate import ATP-binding protein CysA Tax=Patulibacter medicamentivorans RepID=H0E389_9ACTN
sulfate ABC transporter ATPase
PLM2_5_b1_sep16_scaffold_708_23
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17847..18305)
DNA (459bp) protein (153aa)
Transcriptional regulator, BadM/Rrf2 family Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATJ4_RUBXD
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABG05284.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM2_5_b1_sep16_scaffold_708_24
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(18327..19832)
DNA (1506bp) protein (502aa)
Diguanilate cyclase Tax=Patulibacter medicamentivorans RepID=H0E457_9ACTN
Diguanilate cyclase {ECO:0000313|EMBL:EHN11546.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_708_25
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19900..20337)
DNA (438bp) protein (146aa)
hypothetical protein Tax=Ornithinimicrobium pekingense RepID=UPI0003B6F189
Fibronectin {ECO:0000313|EMBL:KGM14219.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
fibronectin
PLM2_5_b1_sep16_scaffold_708_26
unknown

Not on your lists

20373..20435
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 27 items

View Taxonomy