ggKbase home page

PLM2_5_b1_sep16_scaffold_715

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_715_1
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..395)
DNA (393bp) protein (131aa)
hypothetical protein Tax=Streptomyces canus RepID=UPI00036FA93B
hypothetical protein
Glycosyl transferase, group 1 {ECO:0000313|EMBL:AIY17024.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
PLM2_5_b1_sep16_scaffold_715_2

Not on your lists

comp(396..1283)
DNA (888bp) protein (296aa)
Glycosyl transferase family protein Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAQ3_9RHIZ
Marine sediment metagenome DNA, contig: S12H4_L04876 {ECO:0000313|EMBL:GAI81295.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycosyl transferase family protein
PLM2_5_b1_sep16_scaffold_715_3
Streptomyces griseus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1280..1975)
DNA (696bp) protein (232aa)
polysaccharide deacetylase Tax=Streptomyces globisporus RepID=UPI00029AC369
Carbohydrate Esterase Family 4 {ECO:0000313|EMBL:KIX32453.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus.;"
polysaccharide deacetylase
PLM2_5_b1_sep16_scaffold_715_4
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1972..2727)
DNA (756bp) protein (252aa)
hypothetical protein Tax=Streptomyces sp. HmicA12 RepID=UPI000372C124
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:EFH28659.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
PLM2_5_b1_sep16_scaffold_715_5
Streptomyces sp. SirexAA-E, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2763..3737
DNA (975bp) protein (325aa)
Glycosyl transferase family 2 Tax=Streptomyces sp. SirexAA-E RepID=G2NN08_9ACTO
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEN13822.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SirexAA-E / ActE).;"
PLM2_5_b1_sep16_scaffold_715_6
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

3734..4825
DNA (1092bp) protein (364aa)
Cellulose biosynthesis (CelD)-like protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFC6_CONWI
cellulose biosynthesis (CelD)-like protein
Cellulose biosynthesis (CelD)-like protein {ECO:0000313|EMBL:ADB53719.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_715_7
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

4822..6240
DNA (1419bp) protein (473aa)
Succinoglycan biosynthesis transport protein Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=O26442_METTH
succinoglycan biosynthesis transport protein
Tax=RBG_16_Chloroflexi_50_9_curated
PLM2_5_b1_sep16_scaffold_715_8
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

6237..6962
DNA (726bp) protein (242aa)
S-adenosylmethionine (SAM)-dependent methyltransferase Tax=Thermobifida fusca (strain YX) RepID=Q47PB3_THEFY
s-adenosylmethionine (SAM)-dependent methyltransferase
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM2_5_b1_sep16_scaffold_715_9
unknown

Not on your lists

comp(6901..7734)
DNA (834bp) protein (278aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_715_10
Pseudoalteromonas piscicida, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7755..8273
DNA (519bp) protein (173aa)
phosphotyrosine protein phosphatase Tax=Pseudoalteromonas sp. NJ631 RepID=UPI0002F7BCB1
Phosphotyrosine protein phosphatase {ECO:0000313|EMBL:KJZ04359.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas piscicida.;"
protein tyrosine phosphatase
PLM2_5_b1_sep16_scaffold_715_11
Vibrio cholerae, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8270..9367)
DNA (1098bp) protein (366aa)
Polysaccharide deacetylase Tax=Vibrio cholerae RepID=D6NM13_VIBCL
Polysaccharide deacetylase {ECO:0000313|EMBL:ADF80998.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio cholerae.;"
PLM2_5_b1_sep16_scaffold_715_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9367..10725)
DNA (1359bp) protein (453aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Lysine--tRNA ligase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F132_CONWI
lysyl-tRNA synthetase
PLM2_5_b1_sep16_scaffold_715_13
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10849..11322)
DNA (474bp) protein (158aa)
Transcription elongation factor GreA Tax=Alicyclobacillus acidocaldarius RepID=C8WQU3_ALIAD
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus; acidocaldarius).;"
PLM2_5_b1_sep16_scaffold_715_14
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

11506..12495
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F130_CONWI
dihydrouridine synthase
Tax=RBG_13_Actinobacteria_63_9_curated
PLM2_5_b1_sep16_scaffold_715_15
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(12492..13244)
DNA (753bp) protein (251aa)
pantothenate kinase Tax=Paenibacillus ginsengihumi RepID=UPI000382A4C2
pantothenate kinase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_715_16
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

Not on your lists

comp(13255..14871)
DNA (1617bp) protein (539aa)
hypothetical protein Tax=Deinococcus apachensis RepID=UPI000375239E
peptide ABC transporter substrate-binding protein
Tax=RBG_16_Chloroflexi_60_22_curated
PLM2_5_b1_sep16_scaffold_715_17
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(14905..15270)
DNA (366bp) protein (122aa)
hypothetical protein Tax=Leucobacter salsicius RepID=UPI00034A4248
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_715_18
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(15278..15736)
DNA (459bp) protein (153aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP19_DESK7
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_715_19
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15852..17429
DNA (1578bp) protein (526aa)
Proprotein convertase subtilisin/kexin type 6 (EC:3.4.21.-)
Proprotein convertase subtilisin/kexin type 6 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S904_ACTS5
Tax=BJP_IG2158_Thermincola_46_17
PLM2_5_b1_sep16_scaffold_715_20
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(17404..17757)
DNA (354bp) protein (118aa)
Dihydroneopterin aldolase Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I1N3_DESAP
dihydroneopterin aldolase
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM2_5_b1_sep16_scaffold_715_21
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(17754..18530)
DNA (777bp) protein (259aa)
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F125_CONWI
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_715_22
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

18605..20356
DNA (1752bp) protein (584aa)
Putative ABC transporter permease/ATP-binding protein Tax=Ilumatobacter coccineus YM16-304 RepID=M5APW5_9ACTN
putative ABC transporter permease/ATP-binding protein
Putative ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:BAN03235.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Displaying 22 items

View Taxonomy