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PLM2_5_b1_sep16_scaffold_2627

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_2627_1
unknown

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1..276
DNA (276bp) protein (92aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_2627_2
Human herpesvirus 8, Rhadinovirus, Herpesvirales, Viruses

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286..942
DNA (657bp) protein (219aa)
Latency-associated nuclear antigen Tax=Retroperitoneal fibromatosis-associated herpesvirus RepID=A1XYV9_HHV8
Latency-associated nuclear antigen {ECO:0000313|EMBL:ABH07414.1}; ORF73 {ECO:0000313|EMBL:AGY30760.1}; species="Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus.;" source="Retroperitoneal fibromatosis-associated herpesvirus.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_2627_3
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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939..1556
DNA (618bp) protein (206aa)
hypothetical protein Tax=Thioalkalivibrio RepID=UPI0003637C3F
Hemolysin-type calcium-binding repeat family protein {ECO:0000313|EMBL:ERT06101.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_2627_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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1553..1972
DNA (420bp) protein (140aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM2_5_b1_sep16_scaffold_2627_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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2196..3494
DNA (1299bp) protein (433aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
tRNA-specific 2-thiouridylase MnmA Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCS6_CONWI
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
PLM2_5_b1_sep16_scaffold_2627_6
unknown

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3491..3871
DNA (381bp) protein (127aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_2627_7
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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3868..4629
DNA (762bp) protein (254aa)
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F264_CONWI
sigma-B/F/G subfamily RNA polymerase sigma-28 factor
Tax=RBG_16_Actinobacteria_64_13_curated
PLM2_5_b1_sep16_scaffold_2627_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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4662..7187
DNA (2526bp) protein (842aa)
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Alanine--tRNA ligase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCU1_CONWI
PLM2_5_b1_sep16_scaffold_2627_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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7184..7582
DNA (399bp) protein (133aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Putative Holliday junction resolvase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCU2_CONWI
Holliday junction resolvase YqgF
PLM2_5_b1_sep16_scaffold_2627_10
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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7582..8475
DNA (894bp) protein (298aa)
YceG like protein Tax=Patulibacter medicamentivorans RepID=H0E2Y6_9ACTN
YceG like protein {ECO:0000313|EMBL:EHN11955.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
aminodeoxychorismate lyase
PLM2_5_b1_sep16_scaffold_2627_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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8472..9161
DNA (690bp) protein (230aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Shikimate dehydrogenase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCU4_CONWI
shikimate 5-dehydrogenase
PLM2_5_b1_sep16_scaffold_2627_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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9158..10240
DNA (1083bp) protein (361aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Chorismate synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCW4_CONWI
PLM2_5_b1_sep16_scaffold_2627_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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10225..11631
DNA (1407bp) protein (469aa)
3-dehydroquinate synthase (EC:2.7.1.71 4.2.3.4)
3-dehydroquinate synthase {ECO:0000313|EMBL:ADB51477.1}; EC=2.7.1.71 {ECO:0000313|EMBL:ADB51477.1};; EC=4.2.3.4 {ECO:0000313|EMBL:ADB51477.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
3-dehydroquinate synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCW5_CONWI
PLM2_5_b1_sep16_scaffold_2627_14
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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11641..12072
DNA (432bp) protein (144aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase Tax=Patulibacter americanus RepID=UPI0003B58469
PLM2_5_b1_sep16_scaffold_2627_15
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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12069..12242
DNA (174bp) protein (58aa)
Peptidase M24 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE46_9FIRM
Peptidase M24 {ECO:0000313|EMBL:EEG78340.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP-specific)
Displaying 15 items

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