ggKbase home page

PLM3-1_170_b1_sep16_scaffold_4633

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_4633_1
unknown

Not on your lists

2..76
DNA (75bp) protein (25aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_4633_2
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

82..633
DNA (552bp) protein (184aa)
DNA-binding protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B55475
Rossmann fold nucleotide-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_4633_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

670..3135
DNA (2466bp) protein (822aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Endonuclease MutS2 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P03_SOLUE
Smr protein/MutS2
PLM3-1_170_b1_sep16_scaffold_4633_4
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

3175..4938
DNA (1764bp) protein (588aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000371D1B6
DNA primase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_4633_5
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

5235..7190
DNA (1956bp) protein (652aa)
RNA polymerase sigma factor SigA Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIK4_KORVE
sigma 38, RpoS
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_4633_6
unknown

Not on your lists

7159..7272
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_4633_7
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

7269..7472
DNA (204bp) protein (68aa)
Uncharacterized protein family UPF0150 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DG04_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_4633_8
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7469..7681
DNA (213bp) protein (71aa)
UPI0003CF662E related cluster Tax=unknown RepID=UPI0003CF662E
Uncharacterized protein {ECO:0000313|EMBL:ESY72190.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_4633_9
unknown

Not on your lists

comp(7891..8205)
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_4633_10
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(8483..9142)
DNA (660bp) protein (220aa)
Methyltransferase type 11 Tax=Mycobacterium tusciae JS617 RepID=H1K6M4_9MYCO
Methyltransferase type 11
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_4633_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(9159..9623)
DNA (465bp) protein (155aa)
hypothetical protein Tax=Methylococcus capsulatus RepID=UPI0002ECF251
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_4633_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9734..11053)
DNA (1320bp) protein (440aa)
Major facilitator superfamily (MFS) transporter Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILH1_KORVE
major facilitator superfamily transporter
Major facilitator superfamily (MFS) transporter {ECO:0000313|EMBL:ABF42279.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3-1_170_b1_sep16_scaffold_4633_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11269..11769
DNA (501bp) protein (167aa)
Transcriptional regulator, MarR family Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NF0_SOLUE
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:AHG93885.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3-1_170_b1_sep16_scaffold_4633_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

11786..12304
DNA (519bp) protein (173aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NF1_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ88819.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_170_b1_sep16_scaffold_4633_15
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

12308..12916
DNA (609bp) protein (203aa)
hypothetical protein bin=bin9_gal15 tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
PLM3-1_170_b1_sep16_scaffold_4633_16
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13012..13974
DNA (963bp) protein (321aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI25_THEM7
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU50803.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM3-1_170_b1_sep16_scaffold_4633_17
unknown

Not on your lists

13975..14091
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 17 items

View Taxonomy