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PLM3-1_170_b1_sep16_scaffold_1526

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1526_1

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comp(3..455)
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR Tax=Koribacter versatilis (strain Ellin345) RepID=NRDR_KORVE
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; species="Bacteria; environmental samples.;" source="uncultured marine bacterium PPT_M2.;"
nrdR; transcriptional regulator NrdR
PLM3-1_170_b1_sep16_scaffold_1526_2
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(452..1579)
DNA (1128bp) protein (376aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AX3_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_1526_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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1885..2388
DNA (504bp) protein (168aa)
RNA polymerase sigma factor Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AX4_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_170_b1_sep16_scaffold_1526_4
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

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2392..3057
DNA (666bp) protein (222aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003730012
Tax=RBG_16_Aminicenantes_66_30_curated
PLM3-1_170_b1_sep16_scaffold_1526_5
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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3054..3638
DNA (585bp) protein (195aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037FC53C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO33311.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM3-1_170_b1_sep16_scaffold_1526_6
unknown

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3647..3859
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1526_7

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4208..5140
DNA (933bp) protein (311aa)
Putative uncharacterized protein Tax=uncultured bacterium 282 RepID=E3T635_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ADC35779.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 282.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1526_8
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(5183..6487)
DNA (1305bp) protein (435aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Solibacter usitatus (strain Ellin6076) RepID=AROA_SOLUE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_1526_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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6718..8592
DNA (1875bp) protein (625aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKN7_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42563.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3-1_170_b1_sep16_scaffold_1526_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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9975..10919
DNA (945bp) protein (315aa)
YD repeat protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QH4_SOLUE
YD repeat-containing protein
YD repeat protein {ECO:0000313|EMBL:ABJ88096.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_170_b1_sep16_scaffold_1526_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(10939..12165)
DNA (1227bp) protein (409aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=K6V4G6_9PROT bin=16ft_combo_ws3_JS1 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transporter, major facilitator family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b1_sep16_scaffold_1526_12
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12266..13114
DNA (849bp) protein (283aa)
serine/threonine dehydratase Tax=Sphingomonas sp. KC8 RepID=UPI0002489376
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit {ECO:0000313|EMBL:EDM33824.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
serine/threonine dehydratase
PLM3-1_170_b1_sep16_scaffold_1526_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(13118..16849)
DNA (3732bp) protein (1244aa)
Glycosyl hydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQF1_KORVE
Glycosyl hydrolase {ECO:0000313|EMBL:ABJ84196.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
glycosyl hydrolase
PLM3-1_170_b1_sep16_scaffold_1526_14
unknown

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comp(17153..17527)
DNA (375bp) protein (125aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1526_15
unknown

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comp(17524..17862)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1526_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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18037..18945
DNA (909bp) protein (303aa)
Cel operon protein Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJH6_9BACT
Cel operon protein {ECO:0000313|EMBL:ABV27233.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1526_17
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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18942..19964
DNA (1023bp) protein (341aa)
cell wall biosynthesis glycosyltransferase (EC:2.4.1.83)
Glycosyl transferase group 2 family protein Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJH7_9BACT
Glycosyl transferase group 2 family protein {ECO:0000313|EMBL:ABV27334.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum.;"
PLM3-1_170_b1_sep16_scaffold_1526_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20010..23198)
DNA (3189bp) protein (1063aa)
Acriflavin resistance protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G432_GEOUR
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ABQ26550.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM3-1_170_b1_sep16_scaffold_1526_19
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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comp(23209..24486)
DNA (1278bp) protein (426aa)
Efflux transporter, RND family, MFP subunit bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RND family efflux pump membrane fusion lipoprotein
Tax=GWB2_Nitrospirae_47_37_curated
Displaying 19 items

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