ggKbase home page

PLM3-1_170_b1_sep16_scaffold_1610

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1610_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

1..1788
DNA (1788bp) protein (596aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3)
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_1610_2
unknown

Not on your lists

1797..2468
DNA (672bp) protein (224aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1610_3
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2536..3348)
DNA (813bp) protein (271aa)
Putative uncharacterized protein Tax=Thermincola potens (strain JR) RepID=D5XEA3_THEPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG81974.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
PLM3-1_170_b1_sep16_scaffold_1610_4
Bacillus selenatarsenatis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3351..4163)
DNA (813bp) protein (271aa)
Putative uncharacterized protein Tax=Paenibacillus curdlanolyticus YK9 RepID=E0IAW8_9BACL
Daunorubicin resistance transmembrane protein {ECO:0000313|EMBL:GAM15987.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus selenatarsenatis SF-1.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1610_5
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(4160..5191)
DNA (1032bp) protein (344aa)
drrA; ABC transporter ATPase bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
daunorubicin ABC transporter ATP-binding protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3-1_170_b1_sep16_scaffold_1610_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(5222..6427)
DNA (1206bp) protein (402aa)
ABC-type Na+ efflux pump, permease component Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTM7_OPITP
Na+ ABC efflux pump permease
ABC-type Na+ efflux pump, permease component {ECO:0000313|EMBL:ACB74813.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3-1_170_b1_sep16_scaffold_1610_7
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6424..7161)
DNA (738bp) protein (246aa)
ABC transporter related Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTM6_OPITP
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACB74812.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3-1_170_b1_sep16_scaffold_1610_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(7261..7674)
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMH3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70095.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b1_sep16_scaffold_1610_9
unknown

Not on your lists

comp(7779..7928)
DNA (150bp) protein (50aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1610_10
unknown

Not on your lists

comp(7950..8312)
DNA (363bp) protein (121aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1610_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

8546..9802
DNA (1257bp) protein (419aa)
Efflux transporter, RND family, MFP subunit Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024F1_SOLUE
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_1610_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9799..10836
DNA (1038bp) protein (346aa)
TPR repeat protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQM0_KORVE
hypothetical protein
TPR repeat protein {ECO:0000313|EMBL:ABF40830.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3-1_170_b1_sep16_scaffold_1610_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

10865..11812
DNA (948bp) protein (316aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F68C0
efflux ABC transporter inner membrane protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3-1_170_b1_sep16_scaffold_1610_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

12009..13328
DNA (1320bp) protein (440aa)
Outer membrane efflux protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQM1_KORVE
outer membrane efflux protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_1610_15
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13470..13877
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5W0_ACIC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO31405.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM3-1_170_b1_sep16_scaffold_1610_16
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13874..14248
DNA (375bp) protein (125aa)
Putative uncharacterized protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5V9_ACIC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO31834.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM3-1_170_b1_sep16_scaffold_1610_17
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14273..15442
DNA (1170bp) protein (390aa)
glycosyl transferase (EC:2.4.1.-)
Glycosyl transferase, group 2 family {ECO:0000313|EMBL:ACO31903.1}; EC=2.4.1.- {ECO:0000313|EMBL:ACO31903.1};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Glycosyl transferase, group 2 family Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F415_ACIC5
PLM3-1_170_b1_sep16_scaffold_1610_trna_1
unknown

Not on your lists

15537..15608
DNA (72bp)
transferRNA Gln
PLM3-1_170_b1_sep16_scaffold_1610_18
unknown

Not on your lists

15752..16078
DNA (327bp) protein (109aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1610_19
RLO_PLX_64_10, Bacteria

Not on your lists

16283..18256
DNA (1974bp) protein (658aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003751740
2-oxoacid--ferredoxin oxidoreductase, alpha subunit
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b1_sep16_scaffold_1610_20
RLO_PLX_64_10, Bacteria

Not on your lists

18266..19147
DNA (882bp) protein (294aa)
2-oxoacid:acceptor oxidoreductase subunit beta, pyruvate/2-ketoisovalerate family (EC:1.2.7.3)
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit Tax=mine drainage metagenome RepID=T0ZU80_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b1_sep16_scaffold_1610_21
unknown

Not on your lists

comp(19162..19266)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 22 items

View Taxonomy