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PLM3-1_170_b1_sep16_scaffold_449

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_449_1
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

1..894
DNA (894bp) protein (298aa)
hypothetical protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5527E
hypothetical protein
Tax=GWA2_Nitrospirae_42_11_curated
PLM3-1_170_b1_sep16_scaffold_449_2
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

937..1404
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1Z001_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3-1_170_b1_sep16_scaffold_449_3
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1687..3969
DNA (2283bp) protein (761aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037D78D2
hypothetical protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:ADV81425.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
PLM3-1_170_b1_sep16_scaffold_449_4
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4268..5347)
DNA (1080bp) protein (360aa)
Fis family transcriptional regulator Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4C1AE
two component sigma54 specific Fis family transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3-1_170_b1_sep16_scaffold_449_5
unknown

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5726..6040
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_449_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(6077..6511)
DNA (435bp) protein (145aa)
hypothetical protein bin=bin1_lowGC species=Spirosoma panaciterrae genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
histidine kinase
Tax=CSP1_2_Dadabacteria
PLM3-1_170_b1_sep16_scaffold_449_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6757..7329
DNA (573bp) protein (191aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W75_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_449_8
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

7326..8537
DNA (1212bp) protein (404aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W76_SOLUE
hypothetical protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b1_sep16_scaffold_449_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

8784..9482
DNA (699bp) protein (233aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_449_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

9510..10655
DNA (1146bp) protein (382aa)
hypothetical protein
PKD domain protein bin=GWC2_Chloroflexi_73_18 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_449_11
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(10810..11148)
DNA (339bp) protein (113aa)
Type IV pilus assembly PilZ Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ24_KORVE
type IV pilus assembly PilZ
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_449_12
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(11324..12784)
DNA (1461bp) protein (487aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ16_KORVE
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_449_13
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(12814..14031)
DNA (1218bp) protein (406aa)
Histidine kinase (EC:2.7.13.3)
hypothetical protein Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI000362205F
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_449_14
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

14926..16044
DNA (1119bp) protein (373aa)
Diguanylate cyclase Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LIG7_TREBD
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AEE16208.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
PLM3-1_170_b1_sep16_scaffold_449_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

16109..16435
DNA (327bp) protein (109aa)
Transcriptional regulator, ArsR family Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INL7_KORVE
ArsR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_449_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

16494..17258
DNA (765bp) protein (255aa)
Methyltransferase type 11 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B930_METTP
methyltransferase type 11
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_449_17
unknown

Not on your lists

comp(17268..17837)
DNA (570bp) protein (190aa)
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_449_18
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists


17988..18221
DNA (234bp) protein (78aa)
50S ribosomal protein L31 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V3V8_TERSS
50S ribosomal protein L31
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_449_19
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

18282..19874
DNA (1593bp) protein (531aa)
putative alternative thymidylate synthase bin=PER_GWA2_38_35 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
putative alternative thymidylate synthase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_449_20
unknown

Not on your lists

19871..20524
DNA (654bp) protein (218aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_449_21
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

20642..21046
DNA (405bp) protein (135aa)
Transcriptional dual regulator HU-beta Tax=Candidatus Nitrospira defluvii RepID=D8P884_9BACT
histone-like DNA-binding protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_449_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21022..21381
DNA (360bp) protein (120aa)
hypothetical protein Tax=unclassified candidate division EM 19 RepID=UPI00037C0B6F
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_449_23
unknown

Not on your lists

21418..21915
DNA (498bp) protein (166aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_449_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

22072..23163
DNA (1092bp) protein (364aa)
Peptide chain release factor 1 Tax=Koribacter versatilis (strain Ellin345) RepID=RF1_KORVE
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3-1_170_b1_sep16_scaffold_449_25
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

23185..24078
DNA (894bp) protein (298aa)
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Release factor glutamine methyltransferase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F2J0_ACIC5
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3-1_170_b1_sep16_scaffold_449_26
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

24115..25362
DNA (1248bp) protein (416aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037E8384
PLM3-1_170_b1_sep16_scaffold_449_27
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

25419..26747
DNA (1329bp) protein (443aa)
Metal dependent phosphohydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUE8_KORVE
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_449_28
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

26936..29353
DNA (2418bp) protein (806aa)
Lon protease {ECO:0000255|HAMAP-Rule:MF_01973}; EC=3.4.21.53 {ECO:0000255|HAMAP-Rule:MF_01973};; ATP-dependent protease La {ECO:0000255|HAMAP-Rule:MF_01973}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Lon protease Tax=Koribacter versatilis (strain Ellin345) RepID=LON_KORVE
ATP-dependent protease La
PLM3-1_170_b1_sep16_scaffold_449_29
RLO_PLX_64_10, Bacteria

Not on your lists

comp(29432..32188)
DNA (2757bp) protein (919aa)
Gll0730 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NMN5_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b1_sep16_scaffold_449_30
unknown

Not on your lists

32526..33101
DNA (576bp) protein (192aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

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