ggKbase home page

PLM3-1_170_b1_sep16_scaffold_870

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_870_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

96..1592
DNA (1497bp) protein (499aa)
Aldehyde dehydrogenase Tax=uncultured Acidobacteria bacterium RepID=H5SG58_9BACT
aldehyde dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_870_2
unknown

Not on your lists

1625..2077
DNA (453bp) protein (151aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_870_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

2144..3538
DNA (1395bp) protein (465aa)
NCS1 nucleoside transporter family Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P63_SOLUE
NCS1 nucleoside transporter
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_870_4
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(3606..4892)
DNA (1287bp) protein (429aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
NADH dehydrogenase (Ubiquinone) Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CF05_THET1
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_870_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(5290..6903)
DNA (1614bp) protein (538aa)
Ba3-type terminal oxidase subunit I Tax=Halobacterium salinarum RepID=B0R7A7_HALS3
coxA1; cytochrome c oxidase subunit I
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_870_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6900..7379)
DNA (480bp) protein (160aa)
cbaB; ba3-type terminal oxidase subunit II (EC:1.9.3.-)
Ba3-type terminal oxidase subunit II Tax=Haloferax denitrificans ATCC 35960 RepID=M0IU64_9EURY
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_870_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7398..7574)
DNA (177bp) protein (59aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_870_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(7720..9033)
DNA (1314bp) protein (438aa)
dihydropyrimidine dehydrogenase (EC:1.3.1.1 1.3.1.2)
Dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil dehydrogenase (NAD+) / dihydroorotate oxidase B, catalytic subunit {ECO:0000313|EMBL:ABJ88559.1}; EC=1.3.1.1 {ECO:0000313|EMBL:ABJ88559.1};; EC=1.3.1.2 {ECO:0000313|EMBL:ABJ88559.1};; EC=1.3.98.1 {ECO:0000313|EMBL:ABJ88559.1};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil dehydrogenase (NAD+) / dihydroorotate oxidase B, catalytic subunit Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P61_SOLUE
PLM3-1_170_b1_sep16_scaffold_870_9
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9154..10521)
DNA (1368bp) protein (456aa)
glutamate synthase (NADPH) small subunit (EC:1.4.1.13)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase bin=GWF2_Ignavibacteria_35_20 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b1_sep16_scaffold_870_10
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

10767..12158
DNA (1392bp) protein (464aa)
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase bin=GWF2_Ignavibacteria_35_20 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b1_sep16_scaffold_870_11
unknown

Not on your lists

comp(12155..12742)
DNA (588bp) protein (196aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_870_12
unknown

Not on your lists

comp(12739..13077)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_870_13
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

13194..13682
DNA (489bp) protein (163aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_870_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

13765..14829
DNA (1065bp) protein (355aa)
di-heme cytochrome c peroxidase (EC:1.11.1.5)
Putative di-haem cytochrome c peroxidase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG43_9BACT
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_870_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(14836..15636)
DNA (801bp) protein (267aa)
Uncharacterized protein bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_870_16
unknown

Not on your lists

comp(15626..15787)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 16 items

View Taxonomy