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PLM3-1_170_b1_sep16_scaffold_11447

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_11447_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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1..591
DNA (591bp) protein (197aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_11447_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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588..1745
DNA (1158bp) protein (386aa)
DNA-binding response regulator Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UIA1_MYXSD
DNA-binding response regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_11447_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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1871..2077
DNA (207bp) protein (69aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-)
PAS/PAC sensor hybrid histidine kinase Tax=Frankia sp. (strain CcI3) RepID=Q2JB18_FRASC
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_11447_4
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2074..4152
DNA (2079bp) protein (693aa)
TonB-dependent receptor plug Tax=Pedosphaera parvula Ellin514 RepID=B9XIB6_9BACT
ligand-gated TonB-dependent outer membrane channel
Tax=GWC2_Geobacteraceae_58_44_curated
PLM3-1_170_b1_sep16_scaffold_11447_5

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4140..4724
DNA (585bp) protein (195aa)
Putative transmembrane protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVG9_OPITP
Uncharacterized protein {ECO:0000313|EMBL:AIA11042.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transmembrane protein
PLM3-1_170_b1_sep16_scaffold_11447_6
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4758..5648
DNA (891bp) protein (297aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Phytochrome, two-component sensor histidine kinase Tax=Fulvivirga imtechensis AK7 RepID=L8JWC4_9BACT
PLM3-1_170_b1_sep16_scaffold_11447_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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5614..6216
DNA (603bp) protein (201aa)
Multi-sensor signal transduction histidine kinase bin=GWF2_Lentisphaerae_49_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_11447_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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6242..6709
DNA (468bp) protein (156aa)
Response regulator receiver protein bin=GWF2_Lentisphaerae_49_21 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_11447_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6738..7742
DNA (1005bp) protein (335aa)
PAS domain S-box protein bin=GWA2_Ignavibacteria_55_11 species=Leptospira sp. B5-022 genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
response receiver sensor histidine kinase response regulator, PAS domain-containing
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_11447_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

7736..8638
DNA (903bp) protein (301aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Proteo_65_14_Ab886 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_11447_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(8664..9365)
DNA (702bp) protein (234aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RBQ4_AMMDK
two component, sigma54 specific, transcriptional regulator, Fis family
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_11447_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9417..10019)
DNA (603bp) protein (201aa)
Response regulator receiver protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D048_9BACT bin=ACD79 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
response regulator receiver protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_11447_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(10007..10525)
DNA (519bp) protein (173aa)
Signal transduction histidine kinase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6X9_SINAD
signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Displaying 13 items

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