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PLM3-1_170_b1_sep16_scaffold_1133

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1133_1
unknown

Not on your lists

comp(3..107)
DNA (105bp) protein (35aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1133_2

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comp(121..1191)
DNA (1071bp) protein (357aa)
Transcriptional regulator {ECO:0000313|EMBL:AHN98016.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac193.;"
Fis family two component sigma-54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=CNBR_ACIDO species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family two component sigma-54 specific transcriptional regulator
PLM3-1_170_b1_sep16_scaffold_1133_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1653..2174)
DNA (522bp) protein (174aa)
Putative Transcription termination/antitermination factor NusG bin=GWA2_Elusimicrobia_69_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
putative transcription termination/antitermination factor NusG
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1133_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2177..3229)
DNA (1053bp) protein (351aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1133_5
R_Elusimicrobia_60_11, Elusimicrobia, Bacteria

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3384..3719
DNA (336bp) protein (112aa)
Hypothetical conserved protein Tax=Rhizobium etli (strain CIAT 652) RepID=B3PRC1_RHIE6
type II toxin-antitoxin system antitoxin Phd/YefM family protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_60_11_curated
PLM3-1_170_b1_sep16_scaffold_1133_6
R_Elusimicrobia_60_11, Elusimicrobia, Bacteria

Not on your lists

3716..4141
DNA (426bp) protein (142aa)
Ribonuclease VapC Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D8H0_BRAJP
recombinase
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_60_11_curated
PLM3-1_170_b1_sep16_scaffold_1133_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(4210..7791)
DNA (3582bp) protein (1194aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mfd; transcription-repair coupling factor
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1133_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(7858..8265)
DNA (408bp) protein (136aa)
rfaEb; d-beta-d-heptose 1-phosphate adenosyltransferase (EC:2.7.7.-) bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rfaE bifunctional protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1133_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8331..9722)
DNA (1392bp) protein (464aa)
ABC transporter; K09691 lipopolysaccharide transport system ATP-binding protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
o-antigen ABC exporter, ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1133_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(9849..10640)
DNA (792bp) protein (264aa)
o-antigen export system permease; K09690 lipopolysaccharide transport system permease protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
o-antigen export system permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1133_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(10655..11077)
DNA (423bp) protein (141aa)
ATP synthase F1 subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1133_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(11100..12581)
DNA (1482bp) protein (494aa)
ATP synthase F0F1 subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP synthase F0F1 subunit beta (EC:3.6.3.14)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1133_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12651..13619)
DNA (969bp) protein (323aa)
ATP synthase gamma chain Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIG7_KORVE
ATP synthase F1 subunit gamma
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1133_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(13667..14026)
DNA (360bp) protein (120aa)
ATP synthase F0F1 subunit alpha (EC:3.6.3.15); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP synthase subunit alpha
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying 14 items

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