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PLM3-1_170_b1_sep16_scaffold_1476

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1476_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

109..879
DNA (771bp) protein (257aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-); K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1476_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

879..1283
DNA (405bp) protein (135aa)
mutT; mutator protein MutT (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mutT; mutator protein MutT (EC:3.6.1.-)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1249..2277)
DNA (1029bp) protein (343aa)
gcvT; glycine cleavage system T protein (EC:2.1.2.10)
Aminomethyltransferase, putative bin=GWF2_Methylomirabilis_70_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2296..3966
DNA (1671bp) protein (557aa)
lipoprotein; K06889 bin=CNBR_ACIDO species=Asticcacaulis sp. AC466 genus=Asticcacaulis taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3984..4277
DNA (294bp) protein (98aa)
ABC transporter ATP-binding protein bin=CNBR_ACIDO species=Nocardia farcinica genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1476_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4745..7897)
DNA (3153bp) protein (1051aa)
transcriptional activator domain-containing protein
GAF domain-containing protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3-1_170_b1_sep16_scaffold_1476_7
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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7958..9088
DNA (1131bp) protein (377aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI00036F8E50
integrase catalytic subunit
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_1476_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(8991..9464)
DNA (474bp) protein (158aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T31_SOLUE
protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1476_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9944..10621)
DNA (678bp) protein (226aa)
beta-lactamase bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-lactamase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_1476_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

10680..11027
DNA (348bp) protein (116aa)
Response regulator receiver protein Tax=uncultured Acidobacteria bacterium RepID=H5SEP8_9BACT
Response regulator receiver domain
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11024..11884)
DNA (861bp) protein (287aa)
Protein tyrosine kinase family Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGL0_9BACT
serine/threonine protein kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1476_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11924..12652)
DNA (729bp) protein (243aa)
short chain dehydrogenase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

13034..13888
DNA (855bp) protein (285aa)
malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
malate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1476_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

13923..15788
DNA (1866bp) protein (622aa)
Peptidase M28 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028V5_SOLUE
peptidase M28
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b1_sep16_scaffold_1476_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15797..16420)
DNA (624bp) protein (208aa)
ECF subfamily RNA polymerase sigma factor bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ECF subfamily RNA polymerase sigma-70 factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16679..17365)
DNA (687bp) protein (229aa)
lipoate-protein ligase B (EC:2.3.1.181)
Octanoyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ06_CHLTF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1476_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(17424..18632)
DNA (1209bp) protein (403aa)
2-oxoglutarate dehydrogenase E2 component Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIF0_KORVE
2-oxoglutarate dehydrogenase E2
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1476_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

18702..20195
DNA (1494bp) protein (498aa)
Two component system response regulator, sigma54-specific bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1476_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

20550..21974
DNA (1425bp) protein (475aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1XKJ4_9BACT
radical SAM domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1476_20
unknown

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21971..22075
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 20 items

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