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PLM3-1_170_b1_sep16_scaffold_2704

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_2704_1
unknown

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208..669
DNA (462bp) protein (154aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_2704_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(719..1786)
DNA (1068bp) protein (356aa)
Twitching motility protein bin=GWC2_Deltaproteobacteria_56_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
twitching motility protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_2704_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1883..2857)
DNA (975bp) protein (325aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] bin=CNBR_ACIDO species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
branched-chain amino acid aminotransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_2704_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2886..3860)
DNA (975bp) protein (325aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
serine/threonine protein kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_2704_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3919..4668
DNA (750bp) protein (250aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI000367B452
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_2704_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4665..5975
DNA (1311bp) protein (437aa)
Dicarboxylate carrier MatC domain protein Tax=Acetonema longum DSM 6540 RepID=F7NNI7_9FIRM
Dicarboxylate carrier MatC domain protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_2704_7
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(6111..6962)
DNA (852bp) protein (284aa)
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-); K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L11 methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_2704_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(6959..8104)
DNA (1146bp) protein (382aa)
Chaperone protein DnaJ Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ62_CHLTF
chaperone protein DnaJ
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_2704_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8091..8672)
DNA (582bp) protein (194aa)
Protein GrpE Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67S55_SYMTH
heat-shock protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_2704_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8669..9733)
DNA (1065bp) protein (355aa)
hrcA; heat-inducible transcription repressor HrcA; K03705 heat-inducible transcriptional repressor bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hrcA; heat-inducible transcription repressor HrcA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_2704_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9944..12142)
DNA (2199bp) protein (733aa)
penicillin-binding protein 1A; K05365 penicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
penicillin-binding protein 1A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_2704_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12151..13803)
DNA (1653bp) protein (551aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_2704_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13974..15122
DNA (1149bp) protein (383aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
carbamoyl-phosphate synthase small subunit
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_2704_14
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(15206..15622)
DNA (417bp) protein (139aa)
Putative uncharacterized protein Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IWK2_RHOP2
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_2704_15
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(15609..16268)
DNA (660bp) protein (220aa)
nthB; nitrile hydratase subunit beta (Nitrilase) (NHase) (EC:4.2.1.84)
Cobalt-containing nitrile hydratase subunit beta Tax=Caenispirillum salinarum AK4 RepID=K9HED1_9PROT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_2704_16
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(16265..16996)
DNA (732bp) protein (244aa)
Cobalt-containing nitrile hydratase subunit alpha Tax=Caenispirillum salinarum AK4 RepID=K9GPJ3_9PROT
Cobalt-containing nitrile hydratase subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_2704_17
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

17048..20191
DNA (3144bp) protein (1048aa)
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_2704_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20360..22828
DNA (2469bp) protein (823aa)
ComE-like competence protein; K02238 competence protein ComEC bin=CNBR_ACIDO species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Metallo-beta-lactamase superfamily
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_2704_19
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(22830..23624)
DNA (795bp) protein (265aa)
nucleoside triphosphate pyrophosphohydrolase Tax=Maricaulis sp. JL2009 RepID=UPI00039C5CB1
mazG; nucleoside triphosphate pyrophosphohydrolase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_2704_20
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

23740..24048
DNA (309bp) protein (103aa)
Hypothetical cytosolic protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LUK0_SYNAS
cytoplasmic protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_2704_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

24074..24886
DNA (813bp) protein (271aa)
beta-lactamase domain-containing protein; K06167 PhnP protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-lactamase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_2704_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

24893..25834
DNA (942bp) protein (314aa)
ribF; riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] bin=CNBR_ACIDO species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
riboflavin biosynthesis protein RibF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_2704_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

26036..27379
DNA (1344bp) protein (448aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cysteinyl-tRNA synthetase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_2704_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27364..28728
DNA (1365bp) protein (455aa)
4-aminobutyrate aminotransferase (EC:2.6.1.19)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000370571B
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_2704_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

29195..30193
DNA (999bp) protein (333aa)
Galactose-1-phosphate uridylyltransferase bin=GWA2_OP3_52_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
galactose-1-phosphate uridylyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_2704_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(30184..31512)
DNA (1329bp) protein (443aa)
MFS transporter Tax=Cupriavidus sp. BIS7 RepID=UPI0002EF0F92
major facilitator transporter
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_2704_trna_1
unknown

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31701..31772
DNA (72bp)
transferRNA Gly
PLM3-1_170_b1_sep16_scaffold_2704_trna_2
unknown

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31841..31911
DNA (71bp)
transferRNA Cys
PLM3-1_170_b1_sep16_scaffold_2704_27
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32067..33131)
DNA (1065bp) protein (355aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000361DDB7
Uncharacterized protein {ECO:0000313|EMBL:KCZ88426.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
Displaying 29 items

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