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PLM3-1_170_b1_sep16_scaffold_57

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_57_1
CG_Mariprof_04, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..425)
DNA (351bp) protein (117aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000365133A
globin
Tax=CG_Mariprof_04
PLM3-1_170_b1_sep16_scaffold_57_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(485..961)
DNA (477bp) protein (159aa)
Methylase involved in ubiquinone/menaquinone biosynthesis Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPH4_SOLCM
methylase involved in ubiquinone/menaquinone biosynthesis
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_57_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1012..1296)
DNA (285bp) protein (95aa)
Methyltransferase type 11 Tax=Afipia sp. 1NLS2 RepID=D6V494_9BRAD
Methyltransferase type 11
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_57_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1634..1984)
DNA (351bp) protein (117aa)
mazF2; toxin MazF (EC:3.1.-.-)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490, ECO:0000313|EMBL:CBK42222.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
mRNA interferase Tax=Candidatus Nitrospira defluvii RepID=D8PG35_9BACT
PLM3-1_170_b1_sep16_scaffold_57_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1977..2213)
DNA (237bp) protein (79aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3-1_170_b1_sep16_scaffold_57_6
Candidatus Magnetobacterium bavaricum, Candidatus Magnetobacterium, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(2288..2536)
DNA (249bp) protein (83aa)
Phage integrase protein (DNA breaking and rejoining enzyme) bin=GWA2_Elusimicrobia_69_24 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Site-specific recombinase XerD {ECO:0000313|EMBL:KJU87303.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium.;" source="Candidatus Magnetobacterium bavaricum.;"
PLM3-1_170_b1_sep16_scaffold_57_trna_2
unknown

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comp(2885..2969)
DNA (85bp)
transferRNA Leu
PLM3-1_170_b1_sep16_scaffold_57_7
unknown

Not on your lists

3228..3506
DNA (279bp) protein (93aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_57_8
unknown

Not on your lists

3543..3842
DNA (300bp) protein (100aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_57_9
unknown

Not on your lists

comp(3912..4643)
DNA (732bp) protein (244aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_57_10
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(4640..5641)
DNA (1002bp) protein (334aa)
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_57_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5638..6180)
DNA (543bp) protein (181aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H9S7_ANADF
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_57_12
unknown

Not on your lists

comp(6537..6650)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_57_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6890..7684)
DNA (795bp) protein (265aa)
Putative uncharacterized protein bin=GWB2_Proteobacteria_55_19 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_57_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7796..8959
DNA (1164bp) protein (388aa)
Patatin Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0H9_NITHN
patatin
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_57_15
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

9012..10151
DNA (1140bp) protein (380aa)
gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NSB6_ROSCS
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_57_16

Not on your lists

10206..11522
DNA (1317bp) protein (439aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000370130F
Marine sediment metagenome DNA, contig: S03H2_C01544 {ECO:0000313|EMBL:GAH18865.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_57_17

Not on your lists

11629..12537
DNA (909bp) protein (303aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium HF4000_26D02.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase Tax=uncultured Acidobacteria bacterium HF4000_26D02 RepID=E0XW54_9BACT
PLM3-1_170_b1_sep16_scaffold_57_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(12534..13316)
DNA (783bp) protein (261aa)
hypothetical protein; K06966 bin=CNBR_ACIDO species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_57_19
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(13282..14376)
DNA (1095bp) protein (365aa)
peptidase M50 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
peptidase M50
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_57_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14398..15516)
DNA (1119bp) protein (373aa)
Membrane protein, putative bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
membrane protein, putative
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_57_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15593..16672
DNA (1080bp) protein (360aa)
tartrate dehydrogenase/tartrate decarboxylase/D-malate dehydrogenase (EC:1.1.1.83 1.1.1.93 4.1.1.73)
Tartrate dehydrogenase/tartrate decarboxylase/D-malate dehydrogenase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADL7_GEMAT
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_57_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16701..17132)
DNA (432bp) protein (144aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3-1_170_b1_sep16_scaffold_57_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17310..20258)
DNA (2949bp) protein (983aa)
Sigma54 specific transcriptional regulator, Fis family Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SK14_RHOMR
sigma54 specific Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_57_24
unknown

Not on your lists

comp(20329..20979)
DNA (651bp) protein (217aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_57_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

21215..22423
DNA (1209bp) protein (403aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K7PER7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_57_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

22669..23577
DNA (909bp) protein (303aa)
ial:IALB_2604 DMT superfamily drug/metabolite permease bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
DMT superfamily drug/metabolite permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_57_27
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23615..25870)
DNA (2256bp) protein (752aa)
Lytic transglycosylase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lytic transglycosylase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM3-1_170_b1_sep16_scaffold_57_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(25963..27360)
DNA (1398bp) protein (466aa)
Peptidase M28 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHT1_RHOMR
peptidase M28
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_57_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(27370..28593)
DNA (1224bp) protein (408aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-isopropylmalate synthase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying items 1-30 of 44 in total

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